Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0897
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 28 0.92
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 26 2.8
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 26 2.8
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 26 2.8
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 26 2.8
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 26 2.8
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 6.5
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ... 25 6.5
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 8.6
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 27.9 bits (59), Expect = 0.92
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 428 VFAIKSKIFRVEGIPVSQQHLVYNLKE 508
V IK ++ EGIP SQQ L+Y K+
Sbjct: 23 VSRIKERVEEKEGIPPSQQRLIYAGKQ 49
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQ 49
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQ 49
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQ 49
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQ 49
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 102 VKSKIQDKEGIPPDQQRLIFAGKQ 125
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 178 VKSKIQDKEGIPPDQQRLIFAGKQ 201
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 254 VKSKIQDKEGIPPDQQRLIFAGKQ 277
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 330 VKSKIQDKEGIPPDQQRLIFAGKQ 353
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 437 IKSKIFRVEGIPVSQQHLVYNLKE 508
+KSKI EGIP QQ L++ K+
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQ 49
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 201 RVL*FERFREVQCGADSLVL*CVKCHNMDALRDFRVDRRDSXE 329
R L E R V G+DS +L + + + L FR++ D E
Sbjct: 116 RFLDTEAHRHVNTGSDSELLLNIFAYELQRLDKFRINENDIFE 158
>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 270 SHTIRPSYLHHIALHGNVRITRHDHTTTK 184
SH I + + + G +RI+ H++TTT+
Sbjct: 142 SHKIPLLHFNSVGFAGILRISTHEYTTTQ 170
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -2
Query: 198 HTTTKQINVTSTIVNKNGSC 139
H TK+ ST + KNG C
Sbjct: 285 HANTKECPKCSTTIEKNGGC 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,818,706
Number of Sequences: 5004
Number of extensions: 31067
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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