Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0897
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)          31   0.55 
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   2.9  
SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05)                      29   2.9  
SB_6418| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9)                    28   5.1  
SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_1285| Best HMM Match : SET (HMM E-Value=0.011)                      27   6.7  
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_52288| Best HMM Match : Coprinus_mating (HMM E-Value=0.86)
          Length = 769

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 255 PSYLHHIALHGNVRITRHDHTTTKQINVTS 166
           PS   H+  H N+  TR +H TT+  NVT+
Sbjct: 334 PSISSHVTAHTNLVTTRGEHVTTRGENVTT 363


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 306 LESLSGHPCCDISHTIRPSYLHHIALHGNVRITRHDHTTTK 184
           L  +  HPC   +H   PS  H   ++  +   RH HT TK
Sbjct: 92  LTRVPSHPCS--THGTTPSLAHGYQVNHGLLTVRHPHTGTK 130


>SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05)
          Length = 168

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 94  KFTCKSKYIANKINYKTRKSSCRIPAA 14
           + TCKSK     INY  +KS C +  A
Sbjct: 50  RMTCKSKSTCYSINYIRQKSRCELSGA 76


>SB_6418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 336 HLLXWNPFDLLESLSGHPCCDISHT-IRPSYLHHIALHGNVRITRHDHTTTKQINVTST 163
           HL  +     L   + HP    SH  +  S+ H    H +V  T H H TT  ++VT++
Sbjct: 5   HLTQFVTTSHLHVTTSHPHVTTSHLHVTTSHPHVTTSHLHVT-TSHPHVTTSDLHVTTS 62


>SB_3416| Best HMM Match : AWPM-19 (HMM E-Value=2.9)
          Length = 311

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 300 SLSGHPCCDISHTIRPSYLHH 238
           S  GHP  DI++T  P YL H
Sbjct: 132 STLGHPLADITYTCLPFYLSH 152


>SB_56438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 333 LLXWNPFDLLESLSGHPC-CDISHTI 259
           L+ W PF LL  + G  C C ISH +
Sbjct: 266 LITWLPFQLLNIMLGAGCQCPISHVV 291


>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
          Length = 829

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = -2

Query: 396 SKAVPX*ASSTSXPPSXXRDHLLXWNPFDLLESLSGHPCCDISHTIRPSYLHHIALHGNV 217
           S A+     +TS PPS     +      D +  L G+      HT++ S   HI   G V
Sbjct: 669 SDAIDIVTDNTSVPPSKSLKAVKKIKKGDFICDLWGNVNPIDRHTVQVSKDKHIMPEGKV 728

Query: 216 RITRHDHTTTKQ 181
           + T H  + T +
Sbjct: 729 KFTNHACSPTAE 740


>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 268 THYKTKLSA-PHCTSRKRSNH-KTRSHN 191
           T+Y T L+  PH T+R  S H  TRSH+
Sbjct: 109 TYYTTTLTVRPHNTTRSHSRHDTTRSHS 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,355
Number of Sequences: 59808
Number of extensions: 248890
Number of successful extensions: 821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)