Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0896
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 1e-23
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 78 4e-15
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 76 2e-14
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 69 4e-12
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 3e-11
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 62 4e-10
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 59 3e-09
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 58 5e-09
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 4e-08
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 51 8e-07
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 50 1e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 49 2e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 49 2e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 3e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 9e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 46 3e-05
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 44 7e-05
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 44 9e-05
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 40 0.001
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 40 0.002
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 38 0.008
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 34 0.070
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 33 0.22
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 31 0.50
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.5
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19) 29 2.0
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 29 2.6
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 106 bits (255), Expect = 1e-23
Identities = 44/112 (39%), Positives = 70/112 (62%)
Frame = +2
Query: 233 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 412
P+ + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 413 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
+ ++ + Y +PT IQ Q PIA+SG++++G+A+TGSGKT A++ PA+VH
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPALVH 578
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 78.2 bits (184), Expect = 4e-15
Identities = 32/79 (40%), Positives = 53/79 (67%)
Frame = +2
Query: 329 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 509 GVAQTGSGKTLAYILPAIV 565
GVA+TGSGKT A+ +P +V
Sbjct: 143 GVAETGSGKTAAFAIPLLV 161
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 75.8 bits (178), Expect = 2e-14
Identities = 36/98 (36%), Positives = 57/98 (58%)
Frame = +2
Query: 263 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 442
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 443 YKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 556
++ PTPIQ Q MSG++++G+A+TGSGKTLAY LP
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLP 129
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 457
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 458 PIQAQGWPIAMSGKNLVGVAQTGSGKTL 541
PIQ Q P+ +SG++++ A TGSGK L
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLL 248
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Frame = +2
Query: 218 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFE 394
+ ++ D +V QPF K+FY P + K +P E +E+R + E + V G P++ +
Sbjct: 49 EELQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWA 108
Query: 395 EANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 523
+ + +K Y++PTPIQAQ P+ MSG++++ + T
Sbjct: 109 QTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/73 (43%), Positives = 45/73 (61%)
Frame = +2
Query: 344 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 523
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++ AQT
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 757
Query: 524 GSGKTLAYILPAI 562
GSGKT A++LP +
Sbjct: 758 GSGKTAAFLLPVM 770
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/70 (42%), Positives = 41/70 (58%)
Frame = +2
Query: 353 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 532
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ AQTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 533 KTLAYILPAI 562
KT AY+LP +
Sbjct: 529 KTAAYMLPVL 538
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 61.7 bits (143), Expect = 4e-10
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +2
Query: 305 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 484
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQFILP 116
Query: 485 AMSGKNLVGVAQTGSGKTLAYILP 556
+ N + Q G G + + P
Sbjct: 117 GIVHINHQPLLQPGDGPIVLVLCP 140
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 58.8 bits (136), Expect = 3e-09
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = +2
Query: 380 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 559
++ F + G+ G+ PT IQ QG P+A+SG++++G A+TGSGKTLA+++P
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPI 108
Query: 560 I 562
I
Sbjct: 109 I 109
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 58.0 bits (134), Expect = 5e-09
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +2
Query: 344 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 523
EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++++ AQT
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQT 180
Query: 524 GSGKT 538
GSGKT
Sbjct: 181 GSGKT 185
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +2
Query: 380 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 559
I FE+ + + + V GYK+PTP+Q PI ++L+ AQTGSGKT A+++P
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPI 933
Query: 560 I 562
+
Sbjct: 934 L 934
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +2
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ V +G+ PTPIQA P+A+ GK++ A TG+GKT A++LP +
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPIL 69
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 39/75 (52%)
Frame = +2
Query: 344 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 523
EV + G P + F +Y + +G PT +Q WP + G+++ GVA
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 524 GSGKTLAYILPAIVH 568
GSGK LAY+LP I+H
Sbjct: 234 GSGKRLAYLLP-IIH 247
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
QG+K MG+ T IQ + + G++L+G A+TGSGKTLA+++P +
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/58 (32%), Positives = 38/58 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/58 (32%), Positives = 38/58 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT AY++P +
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +2
Query: 317 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 484
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 485 AMSGKNLVG 511
G G
Sbjct: 197 MAHGPKKSG 205
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Frame = +2
Query: 407 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKTLAYILPAIVH 568
PD + + + G+ +PTPIQ+ P A+ ++++G A+TGSGKTLA+ +P I H
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGIPIIQH 192
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +2
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
MG K+PT IQ P + G++ +G A+TGSGKT A+ LP +
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPIL 66
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +2
Query: 407 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
P V++ +K MG +P PIQ + P S K+L+ ++TG+GK+L ++LP++
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSV 219
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +2
Query: 341 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--NL 505
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N+
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNM 145
Query: 506 VGVAQTGSGKTLAYIL 553
+ +Q+G+GKT A++L
Sbjct: 146 IAQSQSGTGKTAAFVL 161
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +2
Query: 284 PHPTVLK-RSPYEVEEYRNNHEVTV-SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 457
P TV K +E N T S + + F D V + + + +PT
Sbjct: 343 PEATVSKGEKEVTIEAVGQNPAFTPDSDMAFRQRVYSFAGLGLRDDVLKALDALNIHQPT 402
Query: 458 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
IQ P + +++ AQTGSGKTLAY+ P +VH
Sbjct: 403 VIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAP-LVH 438
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/47 (31%), Positives = 31/47 (65%)
Frame = +2
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+G+ G+++P+PIQ + P+ G +L+ A++G+GKT + + A+
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIAL 72
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = +2
Query: 479 PIAMSGKNLVGVAQTGSGKTLAYILP 556
P+ M GK++V +A+TGSGKT A+++P
Sbjct: 313 PLVMDGKDVVAMARTGSGKTAAFLIP 338
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 458 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
PIQA + G++++G A+TG+GKTL++ LP +
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLV 132
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 34.3 bits (75), Expect = 0.070
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = +2
Query: 269 KNFYDPHPTVLKRSPYEVEEYRNNHEV-TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGY 445
K D + LK E +E+ N + TV+ + P+ E P V + + +G+
Sbjct: 467 KELPDENDENLKEFAPEDDEFLKNLSLDTVAQMAAGIPV----ETETPPEVYKALGQLGF 522
Query: 446 KEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
Q Q +SG + + V TG+GK+L Y LPA ++
Sbjct: 523 SSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLPAYMY 563
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/44 (27%), Positives = 28/44 (63%)
Frame = +2
Query: 431 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+T G+++P+ IQ + + G++++ AQ+G+GKT + + +
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVL 56
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 440 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 565
GY + P+Q Q ++ K+ + + TG+GKT+ Y +PA++
Sbjct: 136 GYIDFRPMQRQAIDTLLAEKDSLILLPTGAGKTICYAIPALL 177
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +2
Query: 497 KNLVGVAQTGSGKTLAYILPAI 562
K+++G+A+TGSGKT A+ LP +
Sbjct: 2 KDVIGLAETGSGKTGAFALPIL 23
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 365 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 478
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 275 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 415
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
Length = 493
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 167 YCHRCQIEKNYRRICCLL----QIWNHRFHGYYSSYQT*LFF 54
+CHR Q NY C ++ Q+W+H + SS ++ +F+
Sbjct: 178 FCHRQQYRHNYYNSCLVITFFRQMWDHLWANVGSSVESSVFY 219
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 488 MSGKNLVGVAQTGSGKTLAYILPAIV 565
MSG + + + TG GK+L + LPA+V
Sbjct: 102 MSGVDCILIMPTGGGKSLCFQLPAVV 127
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 461 IQAQGWPIAMSGKNLVGVAQ-TGSGKTLAYILPAIV 565
+Q + G+ V V+ TGSGK+L Y LPA+V
Sbjct: 22 LQQRACETVSKGRQDVFVSMPTGSGKSLCYQLPAVV 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,326
Number of Sequences: 59808
Number of extensions: 327271
Number of successful extensions: 974
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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