Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0896
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 138 2e-33
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 128 3e-30
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 128 3e-30
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 108 3e-24
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 100 8e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 100 8e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 100 8e-22
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 96 2e-20
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 95 2e-20
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 92 3e-19
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 83 1e-16
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 77 6e-15
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 71 4e-13
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 5e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 66 2e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 64 6e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 63 1e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 62 2e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 61 4e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 60 1e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 60 1e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 60 1e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 60 1e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 57 7e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 57 9e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 57 9e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 54 5e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 52 2e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 4e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 51 5e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 51 6e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 49 2e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 48 3e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 48 3e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 4e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 6e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 47 1e-05
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 47 1e-05
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 47 1e-05
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 47 1e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 1e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 2e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 46 2e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 45 3e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 44 7e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 44 9e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 44 9e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 3e-04
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 40 9e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 9e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 40 0.002
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 40 0.002
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 38 0.004
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 38 0.006
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 37 0.011
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 36 0.025
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 35 0.033
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 34 0.058
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.10
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 32 0.23
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 0.54
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.54
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 31 0.71
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 0.71
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 1.6
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 3.8
At2g25460.1 68415.m03049 expressed protein 28 3.8
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 5.0
At1g75850.1 68414.m08810 vacuolar protein sorting-associated pro... 28 5.0
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 6.6
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 6.6
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 6.6
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 6.6
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 6.6
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 6.6
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 27 6.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 138 bits (335), Expect = 2e-33
Identities = 62/117 (52%), Positives = 83/117 (70%)
Frame = +2
Query: 218 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 397
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 398 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVH 160
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 128 bits (309), Expect = 3e-30
Identities = 53/106 (50%), Positives = 78/106 (73%)
Frame = +2
Query: 251 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 430
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 431 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 128 bits (309), Expect = 3e-30
Identities = 53/106 (50%), Positives = 78/106 (73%)
Frame = +2
Query: 251 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 430
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 431 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 108 bits (259), Expect = 3e-24
Identities = 44/111 (39%), Positives = 70/111 (63%)
Frame = +2
Query: 236 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 415
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 416 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVH
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 100 bits (239), Expect = 8e-22
Identities = 44/95 (46%), Positives = 60/95 (63%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 100 bits (239), Expect = 8e-22
Identities = 44/95 (46%), Positives = 60/95 (63%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 100 bits (239), Expect = 8e-22
Identities = 44/95 (46%), Positives = 60/95 (63%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/111 (38%), Positives = 65/111 (58%)
Frame = +2
Query: 236 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 415
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 416 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + H
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 457
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 95.5 bits (227), Expect = 2e-20
Identities = 42/111 (37%), Positives = 65/111 (58%)
Frame = +2
Query: 236 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 415
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 416 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + H
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 590
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 91.9 bits (218), Expect = 3e-19
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Frame = +2
Query: 266 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 565
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/97 (38%), Positives = 61/97 (62%)
Frame = +2
Query: 275 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 455 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 565
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 77.4 bits (182), Expect = 6e-15
Identities = 35/96 (36%), Positives = 59/96 (61%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 457
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 458 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 565
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 71.3 bits (167), Expect = 4e-13
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +2
Query: 317 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 490
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 491 SGKNLVGVAQTGSGKTLAYILPAIVH 568
G++L+G+A+TGSGKTLA+ +PAI+H
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMH 175
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.7 bits (158), Expect = 5e-12
Identities = 25/80 (31%), Positives = 51/80 (63%)
Frame = +2
Query: 329 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 509 GVAQTGSGKTLAYILPAIVH 568
G+A+TGSGKT A++LP + +
Sbjct: 355 GIAETGSGKTAAFVLPMLAY 374
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 65.7 bits (153), Expect = 2e-11
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +2
Query: 428 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 290
Score = 31.1 bits (67), Expect = 0.54
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 323 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 412
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 64.1 bits (149), Expect = 6e-11
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +2
Query: 332 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 499
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 500 NLVGVAQTGSGKTLAYILPAIV 565
A TGSGKT A+I P ++
Sbjct: 180 ECFACAPTGSGKTFAFICPMLI 201
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +2
Query: 221 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 391
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 392 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = +2
Query: 350 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 529
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 530 GKTLAYILPAI 562
GKT A+ LP +
Sbjct: 216 GKTAAFALPTL 226
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 61.3 bits (142), Expect = 4e-10
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +2
Query: 221 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 391
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 392 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/102 (31%), Positives = 53/102 (51%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +2
Query: 308 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 481
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 482 IAMSGKNLVGVAQTGSGKTLAYILPAI 562
A++GK+L+ A TGSGKT ++++P I
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPII 169
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 59.7 bits (138), Expect = 1e-09
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +2
Query: 317 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 496
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 497 KNLVGVAQTGSGKTLAYILPAI 562
K++V A+TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.7 bits (138), Expect = 1e-09
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPML 87
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 57.2 bits (132), Expect = 7e-09
Identities = 24/66 (36%), Positives = 43/66 (65%)
Frame = +2
Query: 365 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 544
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 545 YILPAI 562
+ +P +
Sbjct: 63 FAIPIL 68
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.8 bits (131), Expect = 9e-09
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +2
Query: 221 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 391
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 392 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 56.8 bits (131), Expect = 9e-09
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +2
Query: 221 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 391
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 392 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/60 (40%), Positives = 40/60 (66%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/61 (34%), Positives = 40/61 (65%)
Frame = +2
Query: 380 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 559
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 560 I 562
+
Sbjct: 130 L 130
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/81 (29%), Positives = 46/81 (56%)
Frame = +2
Query: 320 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 499
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 500 NLVGVAQTGSGKTLAYILPAI 562
+++G A+TGSGKTLA+++PA+
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +2
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 568
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHH 91
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.8 bits (116), Expect = 6e-07
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +2
Query: 380 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 559
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 560 I 562
+
Sbjct: 171 V 171
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 190
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 190
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.0 bits (109), Expect = 4e-06
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = +2
Query: 353 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 532
V VEV NP + +++ +K G + PIQA + + + G +LVG A+TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 533 KTLAYILPAI 562
KTLA++LP +
Sbjct: 146 KTLAFVLPIL 155
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 47.6 bits (108), Expect = 6e-06
Identities = 19/58 (32%), Positives = 37/58 (63%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI 139
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/47 (40%), Positives = 33/47 (70%)
Frame = +2
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI 113
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/58 (32%), Positives = 38/58 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/58 (32%), Positives = 38/58 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/58 (32%), Positives = 38/58 (65%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTL 213
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/47 (40%), Positives = 33/47 (70%)
Frame = +2
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +2
Query: 416 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAI 562
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +2
Query: 377 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 538
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT 73
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +2
Query: 407 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYIL 553
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLL 132
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 44.0 bits (99), Expect = 7e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 440 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
G++ TP+QA+ P S K++V A TGSGKTLA++LP I
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 440 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
G++ TP+QA+ P S K++V A TGSGKTLA++LP I
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 410 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPII 139
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 40.3 bits (90), Expect = 9e-04
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +2
Query: 416 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 40.3 bits (90), Expect = 9e-04
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +2
Query: 350 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 529
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 530 GKT 538
GKT
Sbjct: 84 GKT 86
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 335 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS--GKNL 505
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 506 VGVAQTGSGKTLAYIL 553
+ A GSGKT ++L
Sbjct: 135 IAQAHNGSGKTTCFVL 150
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = +2
Query: 416 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +2
Query: 455 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
TP+QA P+ S K++ A TGSGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +2
Query: 401 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPII 161
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 470 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
Q P A++GK+L+ A TGSGKT ++++P I
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 35.5 bits (78), Expect = 0.025
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +2
Query: 266 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 427
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 428 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
+ G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 35.1 bits (77), Expect = 0.033
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 562
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.3 bits (75), Expect = 0.058
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +2
Query: 365 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 544
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 545 Y 547
+
Sbjct: 93 F 93
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.10
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 547
F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 407 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 547
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 419 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 556
+ +K +G QA+ A++GKN+ T SGK+L Y +P
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.54
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +2
Query: 371 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYI 550
H Y E D + G K P+Q Q +M K+ + TG GK+L Y
Sbjct: 180 HETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQ 239
Query: 551 LPA 559
LPA
Sbjct: 240 LPA 242
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 30.7 bits (66), Expect = 0.71
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 416 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAI 562
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIV 84
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 431 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 565
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 440 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 565
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 199 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 20
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 3.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 146 EKNYRRICCLLQIWNHRFHGYY 81
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +2
Query: 230 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 376
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At1g75850.1 68414.m08810 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 838
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 108 NLEEATN-SAIILLDLATVAIDLEDLEDLVG----KKNSLEVRTCVAQIGILFRSNLSTK 272
NL E SA++L +L T + + DL + +L + CV Q I+F SNL +
Sbjct: 36 NLREVLKYSALMLSELRTSKLSPQKYYDLCRFHRQRTLNLSIHACVDQFLIIFPSNLDMR 95
Query: 273 TF 278
F
Sbjct: 96 AF 97
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 221 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 388
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 389 FEE 397
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 221 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 388
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 389 FEE 397
EE
Sbjct: 811 NEE 813
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 171 LEDLEDLVGKKNSLEVRTCVAQIGILFRSNLSTKTFMIH 287
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 455 TPIQAQGWPIAMS 493
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 455 TPIQAQGWPIAMS 493
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 6.6
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 455 TPIQAQGWPIAMS 493
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 488 MSGKNLVGVAQTGSGKTLAYILPAIV 565
M+G++++ + G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,398,348
Number of Sequences: 28952
Number of extensions: 227994
Number of successful extensions: 817
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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