Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0894
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   1.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.4  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    25   7.2  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    25   7.2  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   9.5  

>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 423 PGLNLRTLSTFGHHRNRLCMVKLTGY 346
           P ++L  +  FG   N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 285 TVFGCTGFVGRYVCNKLGKIGT 350
           T   CTG V  + C+ L KIG+
Sbjct: 691 TSVNCTGIVLSFCCDNLAKIGS 712


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 414 LGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 521
           L +   +P HL+ EE    A +Y N + ++   +YE
Sbjct: 272 LQKAFLSPDHLIVEEDFYNASKYLNAISDIPFLNYE 307


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 126 LSQPFYGLNIVIALIYTVDNTPI*NGQTQCECVMCIQYS 10
           L+QPF+G N      Y+    P+ NG   CE  + +Q++
Sbjct: 85  LNQPFFGAN-----YYSGTVMPVPNGGIPCEAEVKLQFN 118


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 28  YTLALSLSILNGSIINC 78
           Y+LAL +SI +GS+I C
Sbjct: 397 YSLALCISIFDGSLIFC 413


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 61  HLKWTNSMRVCNVYTIFLVP 2
           HL ++ S+R+C++Y+I   P
Sbjct: 112 HLDYSFSVRLCSIYSIIFRP 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,448
Number of Sequences: 5004
Number of extensions: 41912
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)