Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0894
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    65   4e-11
01_01_0043 - 321810-321973,322054-322846                               31   0.44 
01_01_0044 - 326337-326500,326618-327398                               31   0.58 
12_01_0844 + 7915121-7915225,7915724-7915777,7915888-7915968,791...    30   1.0  
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834           29   3.1  
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698...    29   3.1  
12_02_0752 + 22784052-22784288,22784531-22784704,22784799-227849...    27   7.2  
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890...    27   7.2  
06_03_0019 + 15506702-15506896,15507741-15507875,15508264-155085...    27   9.5  
03_01_0130 - 1007433-1007712,1007739-1007803,1007804-1008001,100...    27   9.5  

>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 29/64 (45%), Positives = 46/64 (71%)
 Frame = +3

Query: 342 IGTQLILPYRGDFYDAQRLKVCGDLGQVLFTPYHLLDEESIAKAVRYSNVVINLVGRDYE 521
           +G+Q+++P+RG     + LK+ GDLGQ++   Y+  D +SI   +  SNVVINL+GR+YE
Sbjct: 1   MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYE 60

Query: 522 TKNF 533
           T+N+
Sbjct: 61  TRNY 64


>01_01_0043 - 321810-321973,322054-322846
          Length = 318

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +3

Query: 249 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 416
           +GG  +       V G TG++GR+V     ++G   T L+      D   AQ L    D 
Sbjct: 3   SGGDQTTTKSRILVVGGTGYIGRHVVAASARLGHPTTALVRDLAPSDPAKAQLLHTFRDA 62

Query: 417 GQVLFTPYHLLDEESIAKAVRYSNVVINLV 506
           G  L     L D  S+ +AVR ++VVI+ V
Sbjct: 63  GVTLLHG-DLHDHASLLRAVRDADVVISAV 91


>01_01_0044 - 326337-326500,326618-327398
          Length = 314

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +3

Query: 249 TGGRSSFNGIVATVFGCTGFVGRYVCNKLGKIG---TQLILPYR-GDFYDAQRLKVCGDL 416
           +GG    + I+  V G TG++GR+V     ++G   T L+      D   +Q L+   D 
Sbjct: 3   SGGEEKKSRIL--VVGGTGYIGRHVVLASARLGHPTTALVRDLSPSDPAKSQLLQSFRDA 60

Query: 417 GQVLFTPYHLLDEESIAKAVRYSNVVINLVG 509
           G  L     L D  S+  AVR ++VVI+ +G
Sbjct: 61  GVTLLHG-DLYDHASLLSAVRDADVVISTLG 90


>12_01_0844 +
           7915121-7915225,7915724-7915777,7915888-7915968,
           7916164-7916209,7916311-7916405,7916581-7916613,
           7916941-7917286,7917372-7917511
          Length = 299

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 255 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLKVCGDL 416
           GR+     VA V G +  +GR +   LGK G ++I+ Y     +A+  +VC ++
Sbjct: 3   GRAKLAAPVAVVTGASRGIGRAIAVALGKAGCKVIVNYAKSGMEAE--EVCREI 54


>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
          Length = 939

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 353 LGTNFSQFVAHIASDKSGATENCGYDAVKATAATSTSLICCKVGF 219
           + ++FS   A+  SDK    EN G   + ++ +  TS    KVGF
Sbjct: 548 ISSSFSNMTANDHSDKLNVKENVGNTIIHSSRSVDTSNAEHKVGF 592


>07_03_1727 +
           29068348-29068571,29069473-29069514,29069593-29069839,
           29069936-29070013,29070551-29070736,29070829-29071126,
           29071775-29072244
          Length = 514

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 279 VATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK-VC--GDLGQVLFTPYHLL 449
           +A V G    +G  VC +L   G  +IL  R +      ++ +C   +L  ++F    +L
Sbjct: 90  LAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNLSNIIFHQLDIL 149

Query: 450 DEESIAKAVRYSN 488
           D  S A   RY N
Sbjct: 150 DGNSRASLARYIN 162


>12_02_0752 +
           22784052-22784288,22784531-22784704,22784799-22784930,
           22785062-22785439
          Length = 306

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 99  YLSHKMAAIALKTQATSKLLHLNGSMSVVYIKAANYSSDRKPNL 230
           YLSHK++ I L T    KL+ +  S+S V       + DR P+L
Sbjct: 121 YLSHKISTIELGTMVFQKLVPV--SLSNVMCTVKILALDRAPDL 162


>03_02_0499 -
           8908323-8908423,8908822-8908972,8909761-8909867,
           8909954-8910170,8910941-8911148,8911261-8911358
          Length = 293

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 255 GRSSFNGIVATVFGCTGFVGRYVCNKLGKIGTQLILPYRGDFYDAQRLK 401
           GR S +G +A V G T  +GR V  +L  +G  +    R +    +RLK
Sbjct: 14  GRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLK 62


>06_03_0019 +
           15506702-15506896,15507741-15507875,15508264-15508501,
           15508652-15508855,15508945-15509111
          Length = 312

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 288 VFGCTGFVGRYVCNKLGKIG--TQLIL--PYRGDFYDAQRLKVCGDLGQVLFTPYHLLDE 455
           V G TG++GRY+     +    T +++  P   D   A  L+   D G  L     L   
Sbjct: 13  VIGGTGYIGRYIVAASAREDHLTSVLVRDPAPADPAKAAVLQGFRDSGATL-VKGDLYGH 71

Query: 456 ESIAKAVRYSNVVINLVG 509
           +S+  A++ ++VVI+ VG
Sbjct: 72  QSLVAAIKSADVVISAVG 89


>03_01_0130 -
           1007433-1007712,1007739-1007803,1007804-1008001,
           1008103-1008273,1008405-1008553,1008780-1008927,
           1009015-1009083,1009168-1009416,1009516-1009710,
           1009869-1009985,1010205-1011329
          Length = 921

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 478 RTAFAIDSSSRRW*GVNRTWPKSPHTFNLWAS 383
           +TA  +D+ S  W G++  W   PH   +W S
Sbjct: 60  KTARTVDAKSSNWSGMDVVW---PHGHGVWGS 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,070
Number of Sequences: 37544
Number of extensions: 264667
Number of successful extensions: 556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)