Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0893
         (633 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CBA5C Cluster: LMBR1-like conserved region fami...    32   10.0 
UniRef50_A0NK28 Cluster: Transporter protein; n=2; Oenococcus oe...    32   10.0 
UniRef50_A0DPV2 Cluster: Chromosome undetermined scaffold_598, w...    32   10.0 

>UniRef50_UPI00006CBA5C Cluster: LMBR1-like conserved region family
            protein; n=1; Tetrahymena thermophila SB210|Rep:
            LMBR1-like conserved region family protein - Tetrahymena
            thermophila SB210
          Length = 1865

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 287  ITQIHKIYCFIHNNFNIGHKIFFCEILANKT*VKHCLKVK 168
            +  I  I  ++HNN NIG K F C+ + +++ +   + VK
Sbjct: 1275 VPYIKNILKYLHNNLNIGFKEFICDFIKDESGIWWMVNVK 1314


>UniRef50_A0NK28 Cluster: Transporter protein; n=2; Oenococcus
           oeni|Rep: Transporter protein - Oenococcus oeni ATCC
           BAA-1163
          Length = 159

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = -3

Query: 613 YEISYLKFIYLFYLELSAKQILLSGVYFVLSISMILSF 500
           Y IS L  I L+YLE S KQ  LSG+  +L I M++ F
Sbjct: 112 YLISVLATI-LYYLEQSTKQSWLSGLSIILQIIMLVIF 148


>UniRef50_A0DPV2 Cluster: Chromosome undetermined scaffold_598,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_598,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 244

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 162 QKLNFETMFDLCLIRQNFAKKNLMPNIKII-MYKAIYFMYL 281
           Q++    + + CL+  N  K+ L+PNIKI   YK I  M L
Sbjct: 172 QQIQASVIINQCLVTMNLPKQRLIPNIKIFHNYKKINLMNL 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,935,352
Number of Sequences: 1657284
Number of extensions: 6993370
Number of successful extensions: 15783
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15777
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)