Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0893
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   1.7  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   5.2  

>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 557 TDSFIRSLFRTLDFYDSQFYLIKNENFLKFDV---QINLH 447
           T SFI  +   L F D + YLI+  +FL F +   QI LH
Sbjct: 354 THSFIIYIQMQLCFDDLESYLIRRNHFLSFPLCKEQIQLH 393


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 470 FDVQINLHLMCTIEHSRII 414
           + VQ  +HL+CTIE+ + I
Sbjct: 242 YKVQCMIHLLCTIEYEKAI 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,036,467
Number of Sequences: 5004
Number of extensions: 34489
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)