Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0893
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0198 + 2357337-2357339,2357729-2357748,2358324-2358810,235...    28   7.1  

>04_01_0198 +
           2357337-2357339,2357729-2357748,2358324-2358810,
           2358977-2359387
          Length = 306

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 257 IHNNFNIGHKIFFCEILANKT*VKHCLKVKFLSNALSTPQSSQNLRF 117
           I   FN+GHK FF E++      +H   VKF    +    S   L+F
Sbjct: 92  IVREFNVGHKDFFSEVITMSE-TRHKNLVKFFGWCIRLRHSWNILQF 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,596,216
Number of Sequences: 37544
Number of extensions: 153047
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)