Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0893
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               30   1.4  
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)                 29   2.4  
SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)                 29   3.1  
SB_113| Best HMM Match : HALZ (HMM E-Value=0.32)                       28   7.2  

>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +3

Query: 204 RQNFAKKNLMPNIKIIMYKAIYFMYLSYLIIVVTFCIMSVSGPVIII 344
           R++  KK+ + N K+I  +  +F ++  +II++   I+ +   +III
Sbjct: 859 REDCEKKDSLENSKVIPTECFFFFFIIIIIIIIIIIIIIIIIIIIII 905


>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
          Length = 434

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 222 KNLMP-NIKIIMYKAIYFMYLSYLIIVVTFCIMSVS 326
           +NL+P N K+++YK+    YL+Y  +   FC  S S
Sbjct: 341 RNLIPTNAKLVLYKSAVLPYLTYCHLTWHFCKASDS 376


>SB_29732| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 218 CEILANKT*VKHCLKVKFLSNALSTPQSSQNLRFNQNKIV 99
           C+++ N T   H   ++FL+  L TPQ  Q  + ++N+++
Sbjct: 391 CKLMKNMTQQAHIDHLEFLNGKLGTPQLQQGGKPDRNRLI 430


>SB_16120| Best HMM Match : efhand (HMM E-Value=0.0059)
          Length = 399

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 578 LFRVIS*TDSFIRSLFRTLDFYDSQFYLIKNENFLKFDVQINLHLMCTIEHSR 420
           L +V+    +F+R    T +F    F  IK      F V IN+H  CT + SR
Sbjct: 51  LRKVLPTKSNFMRQFLTTKEFCQVDF--IKVSKAFLFSVIINIHTHCTCKTSR 101


>SB_113| Best HMM Match : HALZ (HMM E-Value=0.32)
          Length = 255

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/21 (47%), Positives = 18/21 (85%)
 Frame = -2

Query: 545 IRSLFRTLDFYDSQFYLIKNE 483
           + SL +++DF+++QF LIKN+
Sbjct: 9   VNSLEKSMDFFNNQFELIKNK 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,578,002
Number of Sequences: 59808
Number of extensions: 212075
Number of successful extensions: 389
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)