Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0884
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   1.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   6.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   6.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   6.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   6.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   6.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   6.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   6.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   9.1  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 NNTIHNSYYIKTTDEMYFQYVYI*KI 290
           NNTIHN+ Y K   ++Y+  + I +I
Sbjct: 320 NNTIHNNNYNK---KLYYNIINIEQI 342


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 NNTIHNSYY 239
           NNTIHN+ Y
Sbjct: 86  NNTIHNNNY 94


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 NNTIHNSYY 239
           NNTIHN+ Y
Sbjct: 86  NNTIHNNNY 94


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 NNTIHNSYY 239
           NNTIHN+ Y
Sbjct: 87  NNTIHNNNY 95


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 NNTIHNSYY 239
           NNTIHN+ Y
Sbjct: 87  NNTIHNNNY 95


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 NNTIHNSYY 239
           NNTIHN+ Y
Sbjct: 87  NNTIHNNNY 95


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 213 NNTIHNSYY 239
           NNTIHN+ Y
Sbjct: 87  NNTIHNNNY 95


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 210 INNTIHNSYYIKTTDEMYFQYV 275
           +NNTIHN+   K        Y+
Sbjct: 308 LNNTIHNNNNYKKLQYYNINYI 329


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 210 INNTIHNSYYIKTTDEMYFQYV 275
           +NNTIHN+   K        Y+
Sbjct: 319 LNNTIHNNNNYKKLQYYNINYI 340


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 210 INNTIHNSYYIKTTDEMYFQYV 275
           +NNTIHN+   K        Y+
Sbjct: 319 LNNTIHNNNNYKKLQYYNINYI 340


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 210 INNTIHNSYYIKTTDEMYFQYV 275
           +NNTIHN+   K        Y+
Sbjct: 308 LNNTIHNNNNYKKLQYYNINYI 329


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 178 YIYSLSF*WGKNFPILQDKK 119
           Y Y+ S  WG+   IL+  K
Sbjct: 259 YTYNYSMYWGQGHAILKGLK 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,667
Number of Sequences: 438
Number of extensions: 1496
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)