Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0883
         (341 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   0.38 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   1.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   8.1  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   8.1  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.38
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 244 GNGRNWSSCFRTKKPGHMH*RNDF 315
           GN ++W+  F+ K  G+   R DF
Sbjct: 190 GNAKHWTGIFQKKWRGYEDFRRDF 213


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/46 (21%), Positives = 20/46 (43%)
 Frame = -3

Query: 282 LRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARFRTTFP 145
           ++S+   P P I SP    +S     ++ PN+  +  + +     P
Sbjct: 412 MQSQIINPQPQITSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLP 457


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 208 GQQHAKQYDNRKNR 167
           GQQH  Q D+R  +
Sbjct: 23  GQQHGPQSDSRNQQ 36


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 274 RTKKPGHMH*RNDFTYLG 327
           RT  P H H +++  Y G
Sbjct: 374 RTNLPTHRHPQDEIPYCG 391


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,575
Number of Sequences: 336
Number of extensions: 1775
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)