Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0883
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 0.35
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 0.60
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 0.80
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 0.80
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 1.4
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 2.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 3.2
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch... 25 3.2
SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|c... 25 3.2
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 24 5.6
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 24 5.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 23 9.8
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 23 9.8
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 23 9.8
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 23 9.8
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 28.3 bits (60), Expect = 0.35
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 269 HELQFRPLPHHAEIILRSETGPTARQT 189
H Q PLP+H + ET PT QT
Sbjct: 622 HNKQTNPLPYHIVYMFSFETSPTVFQT 648
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 0.60
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 177 LLSYCLACCWPGLGAKNNLRV-VRQWAELEFVFPN 278
LLS ACC G + N+++ V + E+ V+PN
Sbjct: 618 LLSLWTACCVTDEGKEKNIKIAVEIFREISIVYPN 652
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 0.80
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 261 PVPPIASPRGD-YSSLRDRANSTPNNMTIEK 172
P PP + D Y +L D A +PN MTI+K
Sbjct: 1099 PPPPAEVEKKDLYLALYDFAGRSPNEMTIKK 1129
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 0.80
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 169 RSIPYDISSLKASNS*GSYLIVNLQF 92
RS P D+SS S + GS+L NL F
Sbjct: 478 RSSPRDLSSFSTSVNDGSFLFKNLMF 503
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 312 IVSLMHMTGLLRSETRTPVPPIASPRGDYSSLRDRANST 196
+ S++ +T L+S T +P PP++SP S N +
Sbjct: 317 VSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNES 355
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +1
Query: 28 IFICTYINSINSFTSLSTLR*GTVN*QLNKILSCWMLLNWK 150
I +C Y+ +N+F SL ++ + ++++ W LN K
Sbjct: 738 IQVCDYLRELNNFASLFSIISALNSSPIHRLRKTWANLNSK 778
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 3.2
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -2
Query: 307 FSNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYDISSLKASN 128
+SN D+ +S + ++S + ++ LF R HA + ++ + D SLK N
Sbjct: 974 YSNPDDKNTSTSDEDTSESEEESSNGLFSLAREANSHASKSLPQRRQIQFLDFDSLKTKN 1033
>SPBC16D10.01c ||SPBC418.03c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.0 bits (52), Expect = 3.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 112 NKILSCWMLLNWKCRTESSD 171
++IL W LL W C E+ +
Sbjct: 237 DQILDIWYLLGWNCYVEAQN 256
>SPAC57A10.06 |mug15||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 28 IFICTYINSINSFTSLSTLR 87
IF+C + S N FT L + R
Sbjct: 86 IFVCNILESCNEFTDLGSAR 105
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 5.6
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 45 YKLNK*FYVTFYASLRNCKLTIK*DPQLLDAFKLEMSYGI 164
YKL+ F TF + NC L LLDA + YG+
Sbjct: 287 YKLSPFFLDTFTGDVTNCPLR---KNLLLDAIVCDPPYGV 323
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 24.2 bits (50), Expect = 5.6
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 148 KCRTESSDFF-YCHIVWRAVGPVSERRIISAW*GNGRN---WSSCFRT 279
K TE ++ Y HI+ V V + IS W G G N W S R+
Sbjct: 42 KLMTEMFEYIVYAHIIRGLVLEVGDFAGISLWMGPGNNMDDWYSILRS 89
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 23.4 bits (48), Expect = 9.8
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 337 GTEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFA 218
G E P N F N+Y R S + SS C T L F+
Sbjct: 94 GPESPRV-NSFHNSYSRNQSPISRKSSCVTCSTVLPLEFS 132
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 268 TNSSSAHCLTTRRLFFAPRP 209
TNS+S CL RL+ P P
Sbjct: 120 TNSNSPLCLYEHRLYGIPNP 139
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +3
Query: 72 TFYASLRNCKLTIK*DPQLLDAFKLEMSYGIERFFLLSYCLA 197
T +A L ++ PQ++ ++ + + G++ F+LS+ +A
Sbjct: 20 TVFAILGTVCWCVQLIPQIIKNYRAKSTEGLDTLFILSWVVA 61
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 231 LRVVRQWAELEFVFPNEEAR 290
LR R +LEF PNEEAR
Sbjct: 342 LRSGRLDRKLEFPLPNEEAR 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,580
Number of Sequences: 5004
Number of extensions: 27252
Number of successful extensions: 72
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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