Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0883
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 29 1.3
01_01_0051 + 389051-389623 28 2.2
11_06_0147 - 20626854-20627181,20627267-20627377,20627461-206278... 27 2.9
03_06_0118 + 31795050-31796404,31796513-31797083 27 2.9
06_01_0518 + 3750996-3751424 27 3.9
03_05_0758 + 27491778-27492088,27492996-27493113 27 3.9
12_02_1175 + 26702744-26704507 27 5.1
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 5.1
05_02_0162 + 7219596-7219645,7220018-7220498 27 5.1
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 27 5.1
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028... 26 8.9
04_04_0738 - 27680266-27680419,27680542-27680987,27681434-276816... 26 8.9
04_03_0320 - 14316934-14318550 26 8.9
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 26 8.9
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 106 QLNKILSCWMLLNWKCRTESSDFFYCHIVWRAVGPVSER 222
Q+ +++C L NW ++ Y H W V P S R
Sbjct: 441 QVKTVIACCTLHNWILDNGDDEYVYDHETWYRVLPRSNR 479
>01_01_0051 + 389051-389623
Length = 190
Score = 27.9 bits (59), Expect = 2.2
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -2
Query: 304 SNAYDRASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYDISSLKASNS 125
S++ +SS +++SSS L RR P P Q+ K+ + S P S+ +S+S
Sbjct: 117 SSSSSSSSSSESSSSSSDDDLARRRQQRNPSPPPQYKKEARRSPSPSPPSSSSTSSSSSS 176
Query: 124 *GS 116
GS
Sbjct: 177 SGS 179
>11_06_0147 -
20626854-20627181,20627267-20627377,20627461-20627846,
20627949-20628057,20629375-20629421,20629506-20629646
Length = 373
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 304 SNAYDRASSFGNTNSSSAHCLTT 236
+N A+S GNT++SSA C+TT
Sbjct: 347 NNPTTAATSSGNTSASSAPCVTT 369
>03_06_0118 + 31795050-31796404,31796513-31797083
Length = 641
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 123 QLLDAFKLEMSYGI-ERFFLLSYCLACCWPGLGAKNNLRVVRQWAELEFVFP 275
+++DA +L +Y I E +L L C P GA+ ++R V Q+ E + FP
Sbjct: 544 KVIDA-RLHGNYNIDEAILVLKLGLLCSHPLPGARPSMRQVVQYLEGDMPFP 594
>06_01_0518 + 3750996-3751424
Length = 142
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 310 RFSNAYDRASSFGNTNSSSAHCLTTRRL 227
R SNAY+ +S N+ + HC R L
Sbjct: 17 RVSNAYNSGASSSNSTGDTKHCRIMREL 44
>03_05_0758 + 27491778-27492088,27492996-27493113
Length = 142
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 300 MHMTGLLRSETRTPVPPIASPRGD 229
+H+ G S + P P +A+PRGD
Sbjct: 36 VHLAGGTASSSSAPGPAVATPRGD 59
>12_02_1175 + 26702744-26704507
Length = 587
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 339 SAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPR 235
SAPRT R++V L+H L R +P IA+ R
Sbjct: 326 SAPRTFARRLVDLLHSP--LYLPRRLTIPDIAAHR 358
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 210 RANSTPNNMTIEKIARFRTTFPV*KHPTAED 118
RA TP+ I K A T P ++PTAED
Sbjct: 1175 RAAITPSKQVIAKDALSVTPLPPTRYPTAED 1205
>05_02_0162 + 7219596-7219645,7220018-7220498
Length = 176
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 66 YVTFYASLRNCKLTIK*DPQLLDAFKLEMSYGI 164
Y+T + S+ + I D QLLD F+L + GI
Sbjct: 79 YMTLWRSMDGDSVEITSDKQLLDWFQLNLEKGI 111
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 294 MTGLLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARF 160
+T L + T TP PP ++P ++ R S + +E AR+
Sbjct: 29 VTACLATPTPTPPPPTSAPLAPAAAAARRELSAASRAVVEDEARY 73
>07_03_1180 -
24601631-24602142,24602518-24602581,24602811-24602876,
24602949-24603070,24603170-24603344,24603466-24603701,
24603781-24604129,24605009-24605146,24605242-24605289
Length = 569
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 336 APRTQVRKIVSLMHMTGLLR-SETRTPVPPIASPR 235
APR +K V+ +++ ++ TP PP+A P+
Sbjct: 240 APRASTQKDVTKQSYASVVKVTKEGTPTPPVAKPK 274
>04_04_0738 -
27680266-27680419,27680542-27680987,27681434-27681623,
27681711-27681955
Length = 344
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 246 ASPRGDYSSLRDRANSTPNNMTIEKI 169
AS GD+ S++ NS P N T+ I
Sbjct: 48 ASGGGDFLSIQQAVNSVPENNTVRVI 73
>04_03_0320 - 14316934-14318550
Length = 538
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 178 YCHIVWRAVGPVSERRIISAW*GNG 252
Y H+ WR V V ER++ A G G
Sbjct: 399 YVHLQWRTVKKVYERKLADADDGGG 423
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 315 KIVSLMHMTGLLRSETRTPVPPIASPRGDYSSLRD 211
KIV++ +TG +R+++ +P + R + SL D
Sbjct: 231 KIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLED 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,129
Number of Sequences: 37544
Number of extensions: 173351
Number of successful extensions: 508
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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