Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0883
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.75 
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         28   2.3  
SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)               26   7.0  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   26   7.0  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              26   7.0  
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)                   26   9.2  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        26   9.2  
SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)               26   9.2  
SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1571

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 333 PRTQVRKIVSLMHMTGLLRSETRTPVPPIAS 241
           PR  V+KI+   H  GL+ + T T  P +AS
Sbjct: 820 PRFLVKKIIVFTHKKGLIMNPTGTTTPSLAS 850


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 204  WPGLGA-KNNLRVVRQWAELEFVFPNEEARSYALEKRFYVPGSSV 335
            W  LG+  N+ R+ R+W  L   F ++  R +     FY P  +V
Sbjct: 1159 WTNLGSTSNSWRLTRRWVTLMVDFDSDALRFWGKGYGFYEPSLAV 1203


>SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)
          Length = 575

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 279 RSETRTP-VPPIASPRGDYSSLRDRANSTPNNMTIEKIARFRTTFPV*KHPTAEDLI 112
           RS  RT   PP  +    YS L+D A  T ++ T +K+   +  F   +H  A  LI
Sbjct: 3   RSNQRTMFAPPKLTAASVYSKLKDIALFTGHSSTGKKVDIIKGMFVACRHSEARYLI 59


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 220 APRPGQQHAKQYDNRKNRSIPYDISS 143
           +P P +Q   Q DN++ R + Y I+S
Sbjct: 579 SPSPNEQQVIQEDNKRQRRLAYIINS 604


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = -3

Query: 339 SAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARF 160
           S PR       + ++ T  +R    T +P +++PR  Y S   R  +T     +   A  
Sbjct: 790 STPRHAYDSYSTRIYTTTRVRQVNTTAIPRVSTPRHAYDSYSTRIYTTTRVRHVNTTAIP 849

Query: 159 RTTFP 145
           R + P
Sbjct: 850 RVSTP 854



 Score = 25.8 bits (54), Expect = 9.2
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = -3

Query: 339 SAPRTQVRKIVSLMHMTGLLRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARF 160
           S PR       + ++ T  +R    T +P +++PR  Y S   R  +T     +   A  
Sbjct: 666 STPRHVYDSYSTRIYTTTRVRHVNTTAIPRVSTPRHAYDSYSTRIYTTTRVRQVNTTAIP 725

Query: 159 RTTFP 145
           R + P
Sbjct: 726 RVSTP 730


>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
          Length = 548

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 136 LLNWKCRTESSDFFYCHIVWRAVGP 210
           L+ W        F +C + W +VGP
Sbjct: 369 LVGWSSYAHQGSFSHCSVKWFSVGP 393


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 139 LNWKCRTESSDFFYCHIVWRAVGPVSERRIISAW*G-NGRNWSSCFRTKKP 288
           L + C T+ +   Y + V R   P      ++   G NGRN SSC   + P
Sbjct: 273 LGYLCVTQCTAAQYGNTVTRECSPCDTSVCVTCANGPNGRNCSSCVAPRAP 323


>SB_38843| Best HMM Match : Dickkopf_N (HMM E-Value=0.28)
          Length = 241

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 282 LRSETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARFRTTFPV 142
           ++S  R    P  + RGD       A+   N   I    + R TFPV
Sbjct: 68  IKSRCRCVREPCITERGDKQECDRDADCAANKTCINSFCQTRKTFPV 114


>SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 241  TTRRLFFAPRP--GQQHAKQYDNRKNRSIPYDI 149
            TT   F+ P P  G++H K  +N  N+S  Y +
Sbjct: 1020 TTATRFYIPHPDQGRKHMKASENTDNKSRDYSM 1052


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,769
Number of Sequences: 59808
Number of extensions: 196376
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)