Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0883
         (341 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23390.1 68417.m03372 expressed protein   contains Pfam profi...    29   0.61 
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b...    28   1.4  
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c...    27   3.3  
At5g26680.1 68418.m03171 endonuclease, putative similar to Swiss...    27   4.3  
At3g47660.1 68416.m05188 regulator of chromosome condensation (R...    27   4.3  
At4g00890.1 68417.m00120 proline-rich family protein contains pr...    26   5.7  
At1g80220.1 68414.m09388 hypothetical protein                          26   5.7  
At1g27580.1 68414.m03361 F-box family protein similar to F-box p...    25   10.0 

>At4g23390.1 68417.m03372 expressed protein   contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 401

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 187 IVWRAVGPVSERRIISAW*GNGRNWSSCFRTKKPGHMH 300
           IV+  +   ++  + + W  +G N + C+ T +PG +H
Sbjct: 208 IVYPGLNQNNQSHLFTYWTADGNNKTHCYNTLRPGFVH 245


>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
           boundaries domain protein 18 (LBD18) identical to LOB
           DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
           by full-length cDNA gi:17227163
          Length = 262

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 334 TEDPGT*NRFSNAYDRASSFGNTNSSSAHCLTTRRLFFAPR 212
           T+ P + +   + YD AS F  T SSSA   T +R F  PR
Sbjct: 170 TDLPASVSPLPSTYDLASIFDQTTSSSAWA-TQQRRFIDPR 209


>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
           contains Pfam domains PF00313: 'Cold-shock' DNA-binding
           domain and PF00098: Zinc knuckle
          Length = 203

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 244 GNGRNWSSCFRTKKPGHM 297
           G GR  S C++  +PGHM
Sbjct: 123 GGGRGGSDCYKCGEPGHM 140


>At5g26680.1 68418.m03171 endonuclease, putative similar to
           Swiss-Prot:P39748 FLAP endonuclease-1 (Maturation factor
           1) (MF1) [Homo sapiens]
          Length = 453

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 123 QLLDAFKLEMSYGIERFFLLSYCLAC-CWPGLGAKNNLRVVRQWAELEFVFPNEEARSYA 299
           ++L+  +L M   I+   +LS C  C    G+G +  L+++RQ   +E +  N     Y 
Sbjct: 212 KILEELQLTMDQFID-LCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQ 270

Query: 300 LEKRF 314
           + + +
Sbjct: 271 IPEEW 275


>At3g47660.1 68416.m05188 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1)
          Length = 951

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 265 NSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKN-RSIPYDIS 146
           N+SSA  L +R    AP  G+Q +   +++ N RS+  D S
Sbjct: 121 NNSSALVLHSRSRSLAPENGEQSSSSQNSKSNIRSVSSDTS 161


>At4g00890.1 68417.m00120 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 431

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 276 SETRTPVPPIASPRGDYSSLRDRANSTPN 190
           +ETR+  PPI+ P+ D    R + +S+P+
Sbjct: 238 NETRSQSPPISPPKSD-KQARSQTHSSPS 265


>At1g80220.1 68414.m09388 hypothetical protein
          Length = 255

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 322 GT*NRFSNAYD---RASSFGNTNSSSAHCLTTRRLFFAPRPGQQHAKQYDNRKNRSIPYD 152
           GT  R SN +    R +    +N+ + HC   R      +   + A+++ N K RS P D
Sbjct: 75  GTSFRHSNCFKQFCRNNRKKRSNTKTLHCPLCRGEVLETKKASKTARRFMNAKPRSCPVD 134


>At1g27580.1 68414.m03361 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]; confirmed by FLcDNA GI:16604421; contains
           uncharacterized Arabidoppsis domain shared by 33
           Arabidopsis proteins;simlar to unknown protein
           GB:AAC63676
          Length = 364

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 276 SETRTPVPPIASPRGDYSSLRDRANSTPNNMTIEKIARFRTTFPV*KHPTAEDL 115
           SE R  +PP+ S +G +  +         +M ++    FR  FP   H  AEDL
Sbjct: 72  SEKRIDLPPLESFKGSHFKIWREGEENVKHMLMDDEDPFRDEFP---H-AAEDL 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,265,352
Number of Sequences: 28952
Number of extensions: 138714
Number of successful extensions: 342
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)