Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0882
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    28   0.73 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   2.2  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   5.2  
SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.8  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        25   6.8  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    24   9.0  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    24   9.0  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   9.0  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
 Frame = +2

Query: 74   LWAAVAIDPKHEEAFKVLESTLSILTNQSEHIQLRIASLHMFLTSQQIRENDFIFVHNYI 253
            LWAA+ ++P   E  +++ +++ +   + E +   +  L     ++  + ++  F    +
Sbjct: 689  LWAALLVEPFPFELLRLITTSMHLFIPKEEILDFPLNVLQFDNDNESCQFSETFFREGIL 748

Query: 254  STCNNNQLKRFWYTTVKNLM--TSKSFTDYRVASYYVP--FIVNQVSNPDPLYL 403
            S  +  + +       K L+  T+K F D R   + +    ++ +  N  P  L
Sbjct: 749  SKISLRRAESMHAQIAKELITGTAKEFYDIRTVHHILKGLGVIKKFDNTKPYIL 802


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 128  ESTLSILTNQSEHIQLRIASLHMFLTSQQIRENDFIFV--HNYISTCNNNQLK 280
            ES    LTN  EHI L+  S  + +  + I +  FI    H Y S C    LK
Sbjct: 1069 ESRRRYLTNLYEHIVLKAESHQICIICRDIIKQGFITTCGHLYCSFCLEAWLK 1121


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -3

Query: 76  QPLVSVPSTISINDPQV 26
           +P+V+VPS + I+DP +
Sbjct: 429 KPIVNVPSIVEIDDPTI 445


>SPBC1105.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 142

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 131 STLSILTNQSEHIQLRIASLHMFLTSQQIRENDFIFVHN 247
           +TL   T+   H    + S  + L   +++EN   F+HN
Sbjct: 26  ATLGEFTDDQTHHYSTLPSCDLLLIRGEVKENARCFLHN 64


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 24/101 (23%), Positives = 43/101 (42%)
 Frame = +2

Query: 110 EAFKVLESTLSILTNQSEHIQLRIASLHMFLTSQQIRENDFIFVHNYISTCNNNQLKRFW 289
           E    +++ L+ L N  E  + ++ SLH  LT+   R ND      + S    N L++  
Sbjct: 258 EGLNAIKADLAKLFNLVESQRQKMDSLHFALTNALERLNDISSTSQFPSE-RFNALEKLL 316

Query: 290 YTTVKNLMTSKSFTDYRVASYYVPFIVNQVSNPDPLYLLTN 412
           + ++    ++   T   +A +    I   + N    Y LTN
Sbjct: 317 HDSLSAQSSTADGTSKHLAEFEKE-IKKAMGNAYSPYNLTN 356


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/59 (23%), Positives = 25/59 (42%)
 Frame = +2

Query: 236 FVHNYISTCNNNQLKRFWYTTVKNLMTSKSFTDYRVASYYVPFIVNQVSNPDPLYLLTN 412
           F  N      N  +  +   TV   +  + F  +RV  Y +  I NQ+ + + L  +T+
Sbjct: 360 FPENLTEEFLNGTVGNYSLATVGGSIIPEMFPTFRVYEYNISDIANQLDDREELTEITS 418


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 239 VHNYISTCNNN 271
           VHNY+ +CNN+
Sbjct: 274 VHNYLESCNNH 284


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 334 LQGRFLLRAVHSQSSIQPGSVVSPDQQLYYQRRRG 438
           +     L ++H + +++  + VSPD      R+RG
Sbjct: 455 IDSSLFLNSLHHKGNMESNAEVSPDGMTLLPRKRG 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,178
Number of Sequences: 5004
Number of extensions: 27874
Number of successful extensions: 91
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)