Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0882
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270...    31   0.54 
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868...    29   1.7  
02_02_0630 - 12395305-12395598,12396790-12396882                       27   5.1  
04_01_0319 - 4291144-4293402                                           27   8.8  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    27   8.8  

>09_03_0029 +
           11724581-11724583,11726413-11726610,11726874-11727038,
           11727217-11727283,11727645-11727812,11728070-11728194,
           11728288-11728446,11728552-11728714,11728795-11728920,
           11729000-11729083,11729161-11729528,11729613-11729813,
           11729909-11730018,11730113-11730197,11730360-11730488,
           11730580-11730667,11730805-11730893,11730968-11731267
          Length = 875

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 224 NDFIFVHNYISTCNNNQLKRFWYTTVKNLMTSKSFTDYRVASYYVPFIVNQVSN 385
           N+F+  +++++T   +     WY +  N  T+ SF    +A+  VP +VN +SN
Sbjct: 196 NEFVAGYDFLNTTGYDLNINVWYNSTYNDNTAYSF----IAALRVPRLVNAISN 245


>08_02_0581 +
           18986084-18986176,18986284-18986668,18986779-18986861,
           18986966-18987110,18987823-18987951,18988047-18988171,
           18988261-18988419,18988503-18988665,18988750-18988875,
           18989110-18989471,18989572-18989772,18989873-18989982,
           18990079-18990163,18990298-18990426,18990505-18990610,
           18990688-18990776,18990885-18991184
          Length = 929

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 218 RENDFIFVHNYISTCNNNQLKRFWYTTVKNLMTSKSFTDYRVASYY-VPFIVNQVSN 385
           + N+FI  +++++T NN      WY +  N     + T Y V S   VP +VN  SN
Sbjct: 272 KTNEFIAGYDFLNTNNNGLEINIWYNSTYN-----NNTAYDVISLLRVPRLVNTASN 323


>02_02_0630 - 12395305-12395598,12396790-12396882
          Length = 128

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = -3

Query: 121 LKCLLVLRVDCHGCPQPLVSVPS----TISINDP 32
           + C+LV  ++  GCP PL S PS     +S+N P
Sbjct: 22  VNCILVQAIES-GCPNPLHSPPSHEGDAVSVNPP 54


>04_01_0319 - 4291144-4293402
          Length = 752

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 293 TTVKNLMTSKSFTDYRVASYYVPFIVNQVSNPDPL--YLLTNNYI 421
           T + NL  S++    R+A+++ PF +  +  PD +  Y L +N +
Sbjct: 77  TALGNLSISRTAGSRRLAAFWAPFFLLHLGGPDSVTAYELEDNQL 121


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 107 EEAFKVLESTLSILTNQSEHIQLRIASLHM 196
           EEA K LE T + L  + + I  R+A LH+
Sbjct: 262 EEAKKALEHTKATLKIKEDDINKRLAELHL 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,470,448
Number of Sequences: 37544
Number of extensions: 179460
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)