Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0882
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.015
SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6)              34   0.060
SB_38979| Best HMM Match : I-set (HMM E-Value=0.11)                    33   0.079
SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)                     31   0.32 
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   3.0  
SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12)                28   3.9  
SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   27   9.1  
SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088)             27   9.1  
SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)           27   9.1  

>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1816

 Score = 35.9 bits (79), Expect = 0.015
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
 Frame = +2

Query: 20   EGYLRIIYADSGRDRHERLWAAVAIDPKHE---EAFK-VLESTLSILTNQSEHIQLRIAS 187
            + +L +  + + RD    LW +V  DP+ E     FK VL  + S     +  +Q  + +
Sbjct: 1014 KAFLHVRLSKADRDMTRFLWLSVPGDPESEFQTYRFKSVLSGSASSPFMLNAFLQTHLDN 1073

Query: 188  LHMFLTSQQIRENDFIFVHNYISTCNNNQLKRFWYTTVKNLMTSKSFTDYRVASYYVPFI 367
             H    +Q +R+N  ++V N I+ C  +Q    +Y   +++MT   F     AS   P +
Sbjct: 1074 -HKTPVTQDMRDN--LYVDNIITGCETHQEAPSYYDESRSVMTKAKFNLRSWASNSQPLL 1130


>SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6)
          Length = 656

 Score = 33.9 bits (74), Expect = 0.060
 Identities = 26/95 (27%), Positives = 41/95 (43%)
 Frame = +2

Query: 41  YADSGRDRHERLWAAVAIDPKHEEAFKVLESTLSILTNQSEHIQLRIASLHMFLTSQQIR 220
           Y     DR + +W   A        F ++E TLS+ TNQ         S H F+   + R
Sbjct: 170 YLKINLDREKSIWYQKAFG----RDFPIVEKTLSLATNQ---FPSEFGSRH-FMCRGRTR 221

Query: 221 ENDFIFVHNYISTCNNNQLKRFWYTTVKNLMTSKS 325
           +   IF H ++    +   K  W T ++N+ T+ S
Sbjct: 222 DGMDIF-HQHLIVVPDGPRKASWLTPIENMKTNPS 255


>SB_38979| Best HMM Match : I-set (HMM E-Value=0.11)
          Length = 569

 Score = 33.5 bits (73), Expect = 0.079
 Identities = 25/89 (28%), Positives = 40/89 (44%)
 Frame = +2

Query: 59  DRHERLWAAVAIDPKHEEAFKVLESTLSILTNQSEHIQLRIASLHMFLTSQQIRENDFIF 238
           DR + +W   A        F ++E TLS+ TNQ         S H F+   + R+   IF
Sbjct: 5   DREKSIWYQKAFG----RDFPIVEKTLSLATNQ---FPSEFGSRH-FMCRGRTRDGMDIF 56

Query: 239 VHNYISTCNNNQLKRFWYTTVKNLMTSKS 325
            H ++    +   K  W T ++N+ T+ S
Sbjct: 57  -HQHLIVVPDGPRKASWLTPIENMKTNPS 84


>SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)
          Length = 340

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +1

Query: 199 PDVTADQRERLYIRSQLHKHVQQQSIEEVLVYDR*EPDDQQIVH*LQGRFLLRAVHSQSS 378
           P     Q+++L  + Q  K +Q Q  ++     + +   Q   H  Q R +L+ VH Q+ 
Sbjct: 95  PSQQLQQQQQLLQQLQFRKQLQLQQQQQQQFQVQQQTQQQSQAH-SQLRHILQQVHQQAG 153

Query: 379 IQPGSVVSPDQQLYYQR 429
            QPG+  +  Q +  Q+
Sbjct: 154 GQPGAAANAQQAMTPQQ 170


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 25/96 (26%), Positives = 40/96 (41%)
 Frame = +2

Query: 47   DSGRDRHERLWAAVAIDPKHEEAFKVLESTLSILTNQSEHIQLRIASLHMFLTSQQIREN 226
            D   D H +L   VA   K+E    +L      L NQ  H + RI+ L + + S + R++
Sbjct: 739  DEASDLHSQLDNTVADCIKYEHELNMLIQEKEDLRNQVIHAEKRISDLKIAVQSGE-RDS 797

Query: 227  DFIFVHNYISTCNNNQLKRFWYTTVKNLMTSKSFTD 334
            + +      S   N +L+     T +     KS  D
Sbjct: 798  EDLGAKLAASNARNAKLETQLNNTARQKSLLKSELD 833


>SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12)
          Length = 533

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
 Frame = +2

Query: 29  LRIIYADSGRDRHERLWAAVAIDPKHEEAFKV----LESTLSILTNQSEHIQLRIASLHM 196
           L+ IY     D   + WA +     H    +V    L+    IL N+ EH+  R+     
Sbjct: 119 LQAIYLVDNDDVELQDWACLKDAATHTFKLQVPICWLKLLTGILNNEIEHVFRRVQ---- 174

Query: 197 FLTSQQIRENDFIFVHNYISTCNNN 271
               QQI   + +FV  ++S C  N
Sbjct: 175 -FPMQQISREERLFVSLFMSCCRGN 198


>SB_54603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 151 QSIGAHSTEDSVAA---HVPDVTADQRERLYIRSQLHKHVQQQSIEEVLVYD 297
           + +GA   + +++A    +     D  ++L+  SQLH   Q+ S+E  ++ D
Sbjct: 461 KKVGAEGLDKAISALSSSLQGPVIDSAKKLFTASQLHSAFQKSSVESQMISD 512


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 217 QRERLYIRSQLHKHVQQQSIEEVLVYD 297
           +RE +YI S+ +KH+++     V +YD
Sbjct: 488 KREWVYIYSKAYKHLEKYKYPNVQIYD 514


>SB_45393| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.088)
          Length = 488

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 128 ESTLSILTNQSEHIQLRIASLHMFLTSQQIRENDFIFVHNYISTCNNNQLKRFWYTTVKN 307
           E+   +  N  +     I S H F T  Q  +   IF+  Y++   +  LK+F   T KN
Sbjct: 1   ETVKKVFENLIQLDHPNIVSFHRFWTDVQGEKARVIFITEYMT---SGSLKQFLKKTRKN 57

Query: 308 ---LMTSKSFTDYRVASYYVPFIV 370
               M  K++ D  +  ++ PF V
Sbjct: 58  NYKTMNEKAWYDDGILLFF-PFTV 80


>SB_1787| Best HMM Match : Peptidase_S9 (HMM E-Value=1.5e-08)
          Length = 1057

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 163 AHST--EDSVAAHVPDVTADQRERLYIRSQLHKHVQQQ 270
           AH+T   D + A  P +TAD+RER     +  K + QQ
Sbjct: 334 AHATIYNDRLVASTPLLTADERERQQALLKREKELTQQ 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,001
Number of Sequences: 59808
Number of extensions: 209267
Number of successful extensions: 786
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)