Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0882
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   2.6  
U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical...    27   4.6  
AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical...    27   4.6  
Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
 Frame = +2

Query: 56  RDRHERLWAAVAIDPKHEEAFKVLESTLSILTNQSEHIQLRIASLHMFLTSQQIRENDFI 235
           R RHE  +  + + PK+E     + +T S + N+ EH+ +R    +  +  QQ R+++  
Sbjct: 212 RHRHEDDFDELPL-PKNERKTTTVAATHSEIMNEMEHLFVRGGKKNNGVHKQQRRQSNID 270

Query: 236 FVHNYISTCNNNQLKRF--WYTTVKNLMTSKSFTDY-RVAS 349
            + + +    +N+  R    + +  + M+S S  D+ R+ S
Sbjct: 271 EIPSDVGKLRDNRKGRHNSLFVSPTSGMSSSSTDDFSRITS 311


>U40958-3|ABQ13075.1|  219|Caenorhabditis elegans Hypothetical
           protein F09F9.5 protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +2

Query: 104 HEEAFKVLESTLSILTNQSEHIQLRIASLHMFLTSQQIRENDFIFVHNYISTCNNN--QL 277
           H  + K L S  S  + +S   Q    S+ +F       +  F F+H  I+TC+     L
Sbjct: 15  HHNSMKSLRSVRSQKSMRSLKSQKSTQSIRIFNHHHDTYQTCFGFMHVKIATCSIGFFAL 74

Query: 278 KRFWYTTVKNLMTSKSFTDYRVASYYVPFIV 370
               +T V  + TS+      +  Y +P I+
Sbjct: 75  LGVCFTLVYCVFTSQEQRRPNMKLYAIPMII 105


>AL132862-20|CAD59165.1|  323|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25b protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 206 SQQIRENDFIFVHNYISTCNNNQLKRFWYTTVKNLMTSKSFTDYRVASYYVPFIVNQVSN 385
           +Q+ RE    FV + I TC  ++  R     VK L+  +      +A+   PF +    N
Sbjct: 169 TQEHREVVLAFVRHTIRTCEGDRTVRLVAMLVKKLLRERVLNVEDIAADVKPFTLKYTDN 228


>AL132862-19|CAB70231.2|  640|Caenorhabditis elegans Hypothetical
           protein Y73F8A.25a protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 206 SQQIRENDFIFVHNYISTCNNNQLKRFWYTTVKNLMTSKSFTDYRVASYYVPFIVNQVSN 385
           +Q+ RE    FV + I TC  ++  R     VK L+  +      +A+   PF +    N
Sbjct: 486 TQEHREVVLAFVRHTIRTCEGDRTVRLVAMLVKKLLRERVLNVEDIAADVKPFTLKYTDN 545


>Z81533-4|CAB04338.1|  280|Caenorhabditis elegans Hypothetical
           protein F36G9.7 protein.
          Length = 280

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +2

Query: 251 ISTCNNNQLKRFWYTTVKNLMTSKSFTDYRVASYYVPFIVNQVSNPDPLYLLTNNYIISG 430
           I   N  Q+K+ W T   N  +SK   +++V    + ++V  +     LY+L  +   SG
Sbjct: 116 IRKSNKEQVKQ-WETDKSNRSSSKKLMNFKVFWRIIVYLVILIGTFSALYVLHISIHTSG 174

Query: 431 EED 439
            E+
Sbjct: 175 FEN 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,258
Number of Sequences: 27780
Number of extensions: 156166
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)