Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0881
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3 |S...    71   1e-13
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    31   0.13 
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    30   0.31 
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   2.9  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   3.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.1  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.7  
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    25   6.7  
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch...    25   6.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   8.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.8  

>SPAC23C11.08 |php3||CCAAT-binding factor complex subunit Php3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 116

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 29/40 (72%), Positives = 38/40 (95%)
 Frame = +2

Query: 500 LPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
           LPIAN+A+IMK A+PEN KI+K+A++CVQ+C+SEFISFVT
Sbjct: 12  LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVT 51


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 470 NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
           N    + +  LP A + K++   +P +    K+AR+ + EC  EFI  V+
Sbjct: 2   NDGFADDELSLPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVS 51


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 464 KSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
           KS       D  LP + I +++K  +PE   + K+A + +    + F+SF+T
Sbjct: 5   KSKETSELDDLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLT 56


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 380 NGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQD 493
           NG  V D T VV S    ED+ N ++    N P+   +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASE 316


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -2

Query: 464 YSQSPSCFHLLTHHQN*QQMCHPLPKIHCPISL 366
           Y   P C    TH  N       +P IH P+ L
Sbjct: 127 YDPRPGCLKFTTHEINVSYTDTSIPVIHIPVQL 159


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 470  NAPLREQDRFLPIA-NIAKIMKRAIPENGKIAKDARECVQEC 592
            + P  E D    I  ++A +   +IP+N KI+  AR+ +++C
Sbjct: 1245 STPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIEQC 1286


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 229 LNTQFCKHYVTLSCKSSTHFFNKRELLLK 315
           L +   K  +T  CK +T +FN R   +K
Sbjct: 106 LKSHRIKDKITTKCKGTTKYFNSRHFEIK 134


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 365 LVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSK 466
           L    NG+ V +D F    +DV E+E + D+  K
Sbjct: 118 LAEQPNGYFVLNDIFRFLREDVEEEEESPDAVEK 151


>SPBC1347.09 |||hexaprenyldihydroxybenzoate
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 413 VNSDDVLEDENNSDSGSKSNAPLREQDRFL 502
           V S  +L+ E+NS++  + + P  +QDR L
Sbjct: 31  VISSKILQFEDNSETSLRHDLPKYDQDRLL 60


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 141 LYIYSHIE*MELDLFYFVKNLWNHH 67
           L +  HI     DLF  +K+ WN H
Sbjct: 877 LIVRQHIRSFLPDLFKLIKDFWNPH 901


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 377 DNGFLVADDTFVVNSDDVLEDENNS 451
           D   L ++D  V NSDD++ED +N+
Sbjct: 355 DGEDLESEDEEVDNSDDIVEDGDNA 379


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = +2

Query: 506  IANIAKIMKRAIPENGKI------AKDARECVQECIS 598
            I N +K++++  P N ++       K+A EC+QE I+
Sbjct: 3314 ICNYSKVLEKLEPLNSEVDRLKLEQKNAEECIQETIA 3350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,094
Number of Sequences: 5004
Number of extensions: 50566
Number of successful extensions: 142
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)