Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0881
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical ...    68   5e-12
AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AF025470-4|AAB71054.1|  403|Caenorhabditis elegans Hypothetical
           protein W10D9.4 protein.
          Length = 403

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = +2

Query: 479 LREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFV 616
           L +Q+RFLPIAN+ +IMK  +    K+AKDA+EC QEC+SEFISF+
Sbjct: 59  LLDQERFLPIANVVRIMKTQMDPQAKLAKDAKECAQECVSEFISFI 104


>AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14a protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 374 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 508
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 132 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 176


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 374 LDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPI 508
           L  GF VAD+ FV+N+ D +E ++ S    K+     +   FL +
Sbjct: 173 LSVGFAVADERFVINALDFMEKKDPSTHAKKATVLFGDTLEFLEL 217


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -3

Query: 256 RSVYKIVYSRMKEVAIFFESFVQIIKKELMCSPETTLTFIYLFTH*VNGT*FILFCKKSM 77
           RSV  ++ +  + +AI+F  F  I +++L   P      I L +   N      FC   +
Sbjct: 95  RSVLTLLIALERVIAIYFPIFFHIYRQKL---PNFVFLLIILTSELFNQYMIFGFCGNVL 151

Query: 76  ESPLTDV*FF 47
           E+P+  + FF
Sbjct: 152 ETPVDCLNFF 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,049
Number of Sequences: 27780
Number of extensions: 274894
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)