Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0881
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14540.1 68417.m02240 CCAAT-box binding transcription factor ... 89 3e-18
At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,... 87 1e-17
At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,... 87 1e-17
At2g38880.3 68415.m04778 histone-like transcription factor (CBF/... 85 3e-17
At2g38880.2 68415.m04777 histone-like transcription factor (CBF/... 85 3e-17
At2g38880.1 68415.m04779 histone-like transcription factor (CBF/... 85 3e-17
At5g47640.1 68418.m05882 CCAAT-box binding transcription factor ... 85 4e-17
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,... 85 5e-17
At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,... 81 4e-16
At5g47670.1 68418.m05885 CCAAT-box binding transcription factor ... 76 2e-14
At2g47810.1 68415.m05967 histone-like transcription factor (CBF/... 73 2e-13
At1g21970.1 68414.m02749 CCAAT-box binding transcription factor ... 69 3e-12
At1g09030.1 68414.m01007 histone-like transcription factor (CBF/... 66 2e-11
At5g23090.2 68418.m02700 TATA-binding protein-associated phospho... 41 6e-04
At5g23090.1 68418.m02699 TATA-binding protein-associated phospho... 41 6e-04
At5g08190.1 68418.m00957 TATA-binding protein-associated phospho... 41 8e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 1.9
At3g15600.1 68416.m01976 hypothetical protein low similarity to ... 29 1.9
At5g23090.3 68418.m02701 TATA-binding protein-associated phospho... 29 2.5
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 29 2.5
At5g43520.1 68418.m05321 DC1 domain-containing protein contains ... 28 5.7
At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138... 27 7.6
>At4g14540.1 68417.m02240 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 161
Score = 88.6 bits (210), Expect = 3e-18
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 2/65 (3%)
Frame = +2
Query: 431 LEDENNSDSGSKS--NAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEF 604
+ D +N G K NA REQDRFLPIAN+++IMK+A+P N KI+KDA+E VQEC+SEF
Sbjct: 1 MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60
Query: 605 ISFVT 619
ISF+T
Sbjct: 61 ISFIT 65
>At2g37060.2 68415.m04548 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 86.6 bits (205), Expect = 1e-17
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +2
Query: 440 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+E VQEC+SEFISFVT
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74
>At2g37060.1 68415.m04547 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 173
Score = 86.6 bits (205), Expect = 1e-17
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +2
Query: 440 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+E VQEC+SEFISFVT
Sbjct: 16 ESGGDQSPRS-LHVREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFVT 74
>At2g38880.3 68415.m04778 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/54 (66%), Positives = 47/54 (87%)
Frame = +2
Query: 458 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA++ VQEC+SEFISF+T
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65
>At2g38880.2 68415.m04777 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 112
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/54 (66%), Positives = 47/54 (87%)
Frame = +2
Query: 458 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA++ VQEC+SEFISF+T
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65
>At2g38880.1 68415.m04779 histone-like transcription factor
(CBF/NF-Y) family protein similar to CAAT-box DNA
binding protein subunit B (NF-YB) (SP:P25209) (GI:22380)
[Zea mays] and CCAAT-binding transcription factor
subunit A (CBF-A) (NF-Y protein chain B) (NF-YB)
(CAAT-box DNA binding protein subunit B) (SP:P25210)
[Petromyzon marinus]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 141
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/54 (66%), Positives = 47/54 (87%)
Frame = +2
Query: 458 GSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
G +S +REQDR+LPIANI++IMK+A+P NGKI KDA++ VQEC+SEFISF+T
Sbjct: 12 GGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65
>At5g47640.1 68418.m05882 CCAAT-box binding transcription factor
subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) similar
to CAAT-box DNA binding protein subunit B (NF-YB)
(SP:P25209) (GI:22380) [Zea mays]; contains Pfam PF00808
: Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; identical to cDNA transcription factor
Hap3b (Hap3b) mRNA, partial cds GI:9965734
Length = 190
Score = 85.0 bits (201), Expect = 4e-17
Identities = 38/58 (65%), Positives = 50/58 (86%)
Frame = +2
Query: 446 NSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
N+ +G S +P REQDRFLPIAN+++IMK+A+P N KI+KDA+E +QEC+SEFISFVT
Sbjct: 15 NNQNGQSSLSP-REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVT 71
>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 228
Score = 84.6 bits (200), Expect = 5e-17
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +2
Query: 440 ENNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
E+ D +S +REQDRFLPIANI++IMKR +P NGKIAKDA+E +QEC+SEFISFVT
Sbjct: 15 ESGGDQSPRS-LNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVT 73
>At2g13570.1 68415.m01496 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 215
Score = 81.4 bits (192), Expect = 4e-16
Identities = 36/57 (63%), Positives = 46/57 (80%)
Frame = +2
Query: 449 SDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
S + +N +EQDRFLPIAN+ +IMK+ +P NGKI+KDA+E VQEC+SEFISFVT
Sbjct: 24 SSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVT 80
>At5g47670.1 68418.m05885 CCAAT-box binding transcription factor
family protein / leafy cotyledon 1-related (L1L)
supporting cDNA gi|27372446|gb|AY138461.1|; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone; contains similarity to
CCAAT-binding transcription factor subunit A (CBF-A)
(NF-Y protein chain B) (NF-YB) (CAAT-box DNA binding
protein subunit B) (Swiss-Prot:P25209) [Zea mays]
Length = 234
Score = 76.2 bits (179), Expect = 2e-14
Identities = 29/59 (49%), Positives = 46/59 (77%)
Frame = +2
Query: 443 NNSDSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
N + +G + +REQDRF+PIAN+ +IM+R +P + KI+ D++E +QEC+SE+ISF+T
Sbjct: 44 NKTSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFIT 102
>At2g47810.1 68415.m05967 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to LEC1-like protein
(GI:22536010) [Phaseolus coccineus]
Length = 160
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/56 (53%), Positives = 43/56 (76%)
Frame = +2
Query: 452 DSGSKSNAPLREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
D + + ++EQDR LPIAN+ +IMK +P N K++K+A+E +QEC+SEFISFVT
Sbjct: 40 DQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVT 95
>At1g21970.1 68414.m02749 CCAAT-box binding transcription factor
(LEC1) similar to CAAT-box DNA binding protein subunit B
(NF-YB) (SP:P25209) (GI:22380) [Zea mays]; identical to
GB:AAC39488 GI:3282674 from [Arabidopsis thaliana] (Cell
93 (7), 1195-1205 (1998)); identified in Plant Cell 2003
Jan;15(1):5-18; contains Pfam PF00808 : Histone-like
transcription factor (CBF/NF-Y) and archaeal histone
Length = 238
Score = 68.5 bits (160), Expect = 3e-12
Identities = 26/46 (56%), Positives = 40/46 (86%)
Frame = +2
Query: 482 REQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
REQD+++PIAN+ +IM++ +P + KI+ DA+E +QEC+SE+ISFVT
Sbjct: 58 REQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVT 103
>At1g09030.1 68414.m01007 histone-like transcription factor
(CBF/NF-Y) family protein contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to CAAT-box DNA binding
protein subunit B (NF-YB) (GI:22380) [Zea mays]
Length = 139
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/47 (55%), Positives = 39/47 (82%)
Frame = +2
Query: 479 LREQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
+ ++DR LPIAN+ ++MK+ +P N KI+K+A++ VQEC +EFISFVT
Sbjct: 1 MTDEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVT 47
>At5g23090.2 68418.m02700 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 159
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +2
Query: 485 EQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
++D LP A + KI+K +P + ++A+DA++ + EC EFI+ V+
Sbjct: 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVS 55
>At5g23090.1 68418.m02699 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 159
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/45 (37%), Positives = 31/45 (68%)
Frame = +2
Query: 485 EQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
++D LP A + KI+K +P + ++A+DA++ + EC EFI+ V+
Sbjct: 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVS 55
>At5g08190.1 68418.m00957 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative similar to Dr1
protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein) (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 163
Score = 40.7 bits (91), Expect = 8e-04
Identities = 16/45 (35%), Positives = 31/45 (68%)
Frame = +2
Query: 485 EQDRFLPIANIAKIMKRAIPENGKIAKDARECVQECISEFISFVT 619
++D LP A + KI+K +P + ++A+DA++ + EC EFI+ ++
Sbjct: 11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLIS 55
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 338 MDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLRE 487
M D + N + D+G V DDT + D + +D N D GS + L +
Sbjct: 480 MADDTVSNSMAESDDGDNVEDDTAI---DSMCDDTANDDVGSDDSGSLAD 526
>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 591
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/81 (18%), Positives = 39/81 (48%)
Frame = +2
Query: 335 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIAN 514
+ DE+ V +G + + V DD ++ E + S + E ++ + +A+
Sbjct: 460 VPQDDEMDGGKVAESDGEMDGEKDKEVPEDDEMDGEKEKEVAEPSEIGMPESEKDIEVAD 519
Query: 515 IAKIMKRAIPENGKIAKDARE 577
K ++ +P++ K+A+ +++
Sbjct: 520 SEK--EKEVPQDAKVAEPSKK 538
>At5g23090.3 68418.m02701 TATA-binding protein-associated
phosphoprotein Dr1 protein, putative (DR1) identical to
Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana];
similar to TATA-binding protein-associated
phosphoprotein (Down-regulator of transcription 1) (DR1
protein (SP:Q01658) [Homo sapiens]; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 146
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/28 (35%), Positives = 22/28 (78%)
Frame = +2
Query: 536 AIPENGKIAKDARECVQECISEFISFVT 619
++P++ ++A+DA++ + EC EFI+ V+
Sbjct: 15 SLPKDVRVARDAQDLLIECCVEFINLVS 42
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/81 (18%), Positives = 39/81 (48%)
Frame = +2
Query: 335 IMDSDELGNDLVRLDNGFLVADDTFVVNSDDVLEDENNSDSGSKSNAPLREQDRFLPIAN 514
+ DE+ V +G + + V DD ++ E + S + E ++ + +A+
Sbjct: 387 VPQDDEMDGGKVAESDGEMDGEKDKEVPQDDEMDGEKEKEVAEPSEIGVPESEKDIEVAD 446
Query: 515 IAKIMKRAIPENGKIAKDARE 577
K ++ +P++ K+A+ +++
Sbjct: 447 SEK--EKEVPQDAKVAEPSKK 465
>At5g43520.1 68418.m05321 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 250
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 470 CSYSQSPSCFHLLTHHQN*QQMCHPLPKIHCP 375
C Y SCF L + N HPL +H P
Sbjct: 57 CDYFLHKSCFDLPSETNNKSHQDHPLTLLHSP 88
>At2g03280.1 68415.m00282 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as ' axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 481
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 238 VYSRMKEVAIFFESFVQIIKKELMCSP 158
++ K +A+ ESF +I+KKE++ P
Sbjct: 338 IFGGAKRLALLKESFPRIVKKEMLLDP 364
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,473,394
Number of Sequences: 28952
Number of extensions: 246148
Number of successful extensions: 654
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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