Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0879
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    30   0.30 
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   4.9  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    25   6.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    25   8.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.5  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 323 RLCKFNSNIFELEQFIIDLNKNKPDSNLAKTK 418
           +L K N  + ELEQ   D+NK+  D +L K K
Sbjct: 864 KLTKLNFQVNELEQLEKDINKSSEDCDLQKKK 895


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 164 SGAFLYPRPRTSLALHQTLSEYCSIK 241
           S A L+P   TSL+L+ + SEY S++
Sbjct: 440 SPANLFPNKETSLSLYSSFSEYNSLE 465


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 475  CFKSI*IIYAVLVNIFDRFLVKLIDFYFISVHSE 576
            CF     I  VL++++   +++L  FY I    E
Sbjct: 903  CFSYKNFISCVLISVYQGLIIQLFTFYLIGFEEE 936


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 263 LD*IVFRF*LSSIRITFDAMQVKFAG 186
           LD  +FRF LSS+ ++  ++ V FAG
Sbjct: 4   LDSSIFRFRLSSLHVSSRSLGVYFAG 29


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 329  CKFNSNIFELEQFIIDLNKNKPDSNLAKTKGYLKSIGRLLRN 454
            C+ NSN F  E+ ++D++ N  D+N       L   G +L+N
Sbjct: 2050 CQLNSNFF--EKILVDMDFN--DNNYRTVANTLFVFGVILKN 2087


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 9   FGTRIHHYRRTVNKYNI 59
           + TR+  Y+R +N YN+
Sbjct: 913 YSTRLEEYQRQINSYNV 929


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 212 QTLSEYCSIKTERRFNRDIIKKTPS*IRQYNLV 310
           Q +S+YC  K  ++ NR++  KT    ++++L+
Sbjct: 578 QEISDYCHFKLLKKVNRNLQIKTNYPTQEFHLL 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,329
Number of Sequences: 5004
Number of extensions: 42203
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)