Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0879
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781...    30   1.2  
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339...    28   6.5  
01_06_1809 - 40029628-40030539                                         27   8.7  

>12_02_1002 +
           25176434-25176501,25176613-25176859,25178106-25178171,
           25178754-25178822,25179007-25179080,25180850-25180991,
           25181546-25181596,25181769-25181774
          Length = 240

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 314 LFQRLCKFNSNIFELEQFIIDLNK-NKPDSNLAKTKGYLKSI 436
           + +R CK N N+  L+Q +   +K N   S L KT  Y+KS+
Sbjct: 104 VMKRRCKINENLKTLQQLVPVCDKSNNQASTLDKTIRYMKSL 145


>12_02_1015 +
           25331667-25332169,25333305-25333406,25333775-25333919,
           25334002-25334186,25334297-25334401,25334507-25334604,
           25334686-25334924,25335030-25335123,25335190-25335275,
           25335579-25335677,25335804-25335869
          Length = 573

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = -3

Query: 384 LFKSIINCSNSNILELNLHSL*NKSTKLYCRIQDGVFLMMSRLNRLSV 241
           L KS+INC N N L L      N ST L   + D +    S L  L +
Sbjct: 247 LSKSVINCPNLNELSLGFTQQNNDSTDL-ISLMDSLGRTCSNLRNLHI 293


>01_06_1809 - 40029628-40030539
          Length = 303

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 125 G*TIFSNNKAFNHSGAFLYPRPRTSLALHQTLSEYCSIKTERRFNR 262
           G T+ S+N   NHS  + Y     + A  +T S   S++    F+R
Sbjct: 89  GATLSSSNSGSNHSNKYNYSPGEAAAAFSRTFSRTRSLRPTPTFSR 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,752,734
Number of Sequences: 37544
Number of extensions: 214906
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)