Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0879
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 28   5.1  
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)               28   6.7  
SB_56953| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_17591| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)                27   8.8  
SB_45955| Best HMM Match : SMC_hinge (HMM E-Value=2)                   27   8.8  

>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +1

Query: 61  SRLNI--AFAMFEFLHKIDRFICW 126
           S+LN   AFA+ EFL K D ++CW
Sbjct: 676 SQLNYTKAFAITEFLRKEDSYMCW 699


>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
          Length = 655

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 143 NNKAFNHSGAFLYPRPRTSLALHQT 217
           N+K   HSGA + P P+ + +LH T
Sbjct: 320 NDKGVEHSGASVVPAPQAADSLHAT 344


>SB_56953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 120 LLVERFLVTIRRSTIVERSCIRARELHLHCIKRYPNTAQSKPKDDLIETSSRKRHL 287
           + + R L  I R  ++ R C  A      C+ + P+TA S P  DL+  +S K +L
Sbjct: 325 IALRRMLRRIPREDVL-RVCTDAIYAKAQCLAKEPSTAPSLP-CDLVAATSAKMYL 378


>SB_17591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 207 CIKRYPNTAQSKPKDDLIETSSR 275
           C+ R P+TA S P D + ETS+R
Sbjct: 424 CLAREPSTAPSLPCDIVAETSAR 446


>SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)
          Length = 792

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 188 PRTSLALHQTLSEYCSIKTERRFNRDIIKK 277
           PR S AL   L+  CS +  ++ +RD++ K
Sbjct: 111 PRESTALFNELASLCSEEKNQQMSRDVLNK 140


>SB_45955| Best HMM Match : SMC_hinge (HMM E-Value=2)
          Length = 665

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 120 LLVERFLVTIRRSTIVERSCIRARELHLHCIKRYPNTAQSKPKDDLIETSSRKRHL 287
           + + R L  I R  ++ R C  A      C+ + P+TA S P  DL+  +S K +L
Sbjct: 391 IALRRMLRRIPREDVL-RVCTDAIYAKAQCLAKEPSTAPSLP-CDLVAATSAKMYL 444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,733,342
Number of Sequences: 59808
Number of extensions: 278856
Number of successful extensions: 703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)