Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0877
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 221 6e-59
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 69 5e-13
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 64 1e-11
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 60 3e-10
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 59 6e-10
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 58 1e-09
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 58 1e-09
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 55 7e-09
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 50 3e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 49 6e-07
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 47 2e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 2e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 44 2e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 41 1e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 40 2e-04
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 40 2e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 4e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 38 8e-04
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 38 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 37 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 37 0.002
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 36 0.006
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.006
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 34 0.014
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.014
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 34 0.018
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 29 0.51
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 29 0.68
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.2
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 1.2
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 1.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 1.6
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 2.1
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 27 2.1
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 2.1
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 27 2.7
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 2.7
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 2.7
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 27 2.7
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz... 27 2.7
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 26 3.6
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 4.8
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 6.3
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 6.3
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 221 bits (540), Expect = 6e-59
Identities = 102/197 (51%), Positives = 146/197 (74%), Gaps = 1/197 (0%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 183
E+AN +IE VNGMLLN K VYVG + R+ER+ ++ FTNVY+KN + +++
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 184 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 363
D+F ++G ITS ++ + RGFGFV + + + A++A ELN KE +GK LYVGRAQ
Sbjct: 279 DLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEY-KGKKLYVGRAQ 337
Query: 364 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 543
KK ER++EL++++EQ+K E++ +YQGVNL++KNL D +DDERL+ EF+ FGTITSAK+M
Sbjct: 338 KKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT 397
Query: 544 -EDGRSKGFGFVCFSSP 591
E G+SKGFGFVC+++P
Sbjct: 398 DEQGKSKGFGFVCYTTP 414
Score = 103 bits (246), Expect = 3e-23
Identities = 57/151 (37%), Positives = 88/151 (58%), Gaps = 10/151 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELG---EKAKLF-------TNVYVKNF 153
E A K+++++N GK +YVGR + ERE+EL E+ KL N+++KN
Sbjct: 312 ECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNL 371
Query: 154 GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 333
++ DE LK F +G ITS K+M + G S+GFGFV + P+ A +A E+N + ++
Sbjct: 372 QDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN-QRMLA 430
Query: 334 GKPLYVGRAQKKAERQKELKRKFEQLKSERL 426
GKPLYV AQ+K R+ +L+ + + RL
Sbjct: 431 GKPLYVALAQRKEVRRSQLEAQIQARNQFRL 461
Score = 90.6 bits (215), Expect = 1e-19
Identities = 60/196 (30%), Positives = 103/196 (52%), Gaps = 1/196 (0%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 183
E K+++++N L+ G+ + + R +++G NV++KN ++ L
Sbjct: 132 EDGEKALDELNYTLIKGRPCRI-MWSQRDPSLRKMGTG-----NVFIKNLDPAIDNKALH 185
Query: 184 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 363
D F +G+I S KV + GN++G+GFV F+ ++A A +NG L+ K +YVG
Sbjct: 186 DTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGM-LLNDKKVYVGHHV 244
Query: 364 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 543
+ ERQ K E LK+ N+Y+KNLD I ++ F FG ITS ++
Sbjct: 245 SRRERQS----KVEALKA------NFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVK 294
Query: 544 -EDGRSKGFGFVCFSS 588
++ + +GFGFV +++
Sbjct: 295 DQNDKPRGFGFVNYAN 310
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 68.9 bits (161), Expect = 5e-13
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 2/170 (1%)
Frame = +1
Query: 88 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGF 264
+ER +L E+ + V+V + L D FE+ G + +++ K G S+G +
Sbjct: 226 RERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAY 285
Query: 265 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV 444
V F D+ + A I L+GK L+ G P+ V + + R+ + + S + ++
Sbjct: 286 VEFCHEDSVQ-AAIALSGKRLL-GLPVIVQLTEAEKNRKAREAAELARAASAEIPFHR-- 341
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSP 591
L V N+ + DE ++ F PFG I + +D RSKGFG++ + +P
Sbjct: 342 -LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNP 390
Score = 47.6 bits (108), Expect = 1e-06
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Frame = +1
Query: 85 RKEREK-ELGEKAKL---FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR 252
RK RE EL A F + V N + +DE +K +FE +G I + D S+
Sbjct: 321 RKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK 380
Query: 253 GFGFVAFEDPDAAERACIELNGKELV-EGKPLYVGRAQKKAERQKELKRKFEQ 408
GFG++ + +P +A A ++NG +L + +G + E + ++F++
Sbjct: 381 GFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDE 433
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 64.5 bits (150), Expect = 1e-11
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIEL 312
V+V + D+ L FE+YG I +V M G S+G+G+V FE P+AA +A +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAA-KAAVAA 323
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
NG + ++G+ + + + + + ++ ++L+ ++V NL ++ L
Sbjct: 324 NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSE-PSDTVFVGNLSFNATEDDL 382
Query: 493 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
F G I S ++ + GR KGFG+V FS
Sbjct: 383 STAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Score = 48.8 bits (111), Expect = 6e-07
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Frame = +1
Query: 358 AQKKAERQKELKRKFEQLKSERLTRY--------QGVNLYVKNLDDTIDDERLRKEFAPF 513
++ ++ + E KRK E ER + + ++V L +DD+ L +EF +
Sbjct: 227 SESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEY 286
Query: 514 GTITSAKVMLE--DGRSKGFGFVCFSSP 591
GTI A+V+++ GRSKG+G+V F +P
Sbjct: 287 GTIVGARVIMDGQSGRSKGYGYVDFETP 314
Score = 41.1 bits (92), Expect = 1e-04
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPR--------KEREKELGEK-AKLFTNVYVKNFG 156
EAA ++ ++G+MV + PR ++R G++ ++ V+V N
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 157 EDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIELNGKELVE 333
+ +++ L F G I S ++ G +GFG+V F D D+A++ C+E+NG +
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK-CVEMNG-HFIA 432
Query: 334 GKP 342
G+P
Sbjct: 433 GRP 435
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 59.7 bits (138), Expect = 3e-10
Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Frame = +1
Query: 130 TNVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERA 300
+N+YVKN + L+D+F +G I S + Y + G S+G+GFVAF +AA RA
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Query: 301 CIELNGKELVEGKPLYVGRAQKKAERQKELKRKF-EQLKSERLTRYQGVNLYVK 459
LNG +V K ++V A++K++R + L+ F + SE+ + L+VK
Sbjct: 442 KDTLNGM-MVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDNKALFVK 494
Score = 45.6 bits (103), Expect = 6e-06
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Frame = +1
Query: 445 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCF 582
NLYVKNLDDT+ +L F+PFG+I S+ + G SKG+GFV F
Sbjct: 383 NLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
Score = 28.7 bits (61), Expect = 0.68
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITS 528
+YV N+D + DE + K F+ +G + S
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVES 45
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITS--HKVM-----------YKDDGNSRGFGFVA 270
+ +YV N SDE + F KYG++ S +++ +K N +GFV
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVK 76
Query: 271 FEDPDAAERACIELNGKELVEGK 339
F + ++ E + G L + K
Sbjct: 77 FVNAESIEEVLKDAKGMTLGQRK 99
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 58.8 bits (136), Expect = 6e-10
Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Frame = +1
Query: 46 LNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV 225
L+GK++ R IPR+E+EK AK+F V D ++E ++ F ++GR+ +
Sbjct: 227 LDGKIIDPKRAIPREEQEKT----AKMF----VGGVPGDCTEEEFRNFFNQFGRVLDATL 278
Query: 226 MY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 402
M KD G RGFGFV +E+ A E + + GKP+ V RA KA + R
Sbjct: 279 MMDKDTGRPRGFGFVTYENESAVEATMSQ--PYITIHGKPVEVKRATPKASLRDSHDRHQ 336
Query: 403 EQLKSERLTRY-QGVNLY 453
Y Q +N+Y
Sbjct: 337 HGYHGNANPYYAQNMNMY 354
Score = 54.4 bits (125), Expect = 1e-08
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIEL 312
+++ + +D+ L+D FE++G + VM G SRGFGF+ F++P +
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV---M 221
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
+ + ++GK + RA + E++K K ++V + +E
Sbjct: 222 SKEHHLDGKIIDPKRAIPREEQEKTAK------------------MFVGGVPGDCTEEEF 263
Query: 493 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
R F FG + A +M+ + GR +GFGFV + +
Sbjct: 264 RNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 591
+++ L+ D+ LR F FG + VM + GRS+GFGF+ F +P
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP 214
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 58.0 bits (134), Expect = 1e-09
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = +1
Query: 133 NVYVKNFGEDF--SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERAC 303
N++VKN ++ + + L+++F K+GRI S + Y S+G+GFV+F P A +A
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 304 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 408
LNG L K L+V A+K+ +R+K L F Q
Sbjct: 480 NTLNG-VLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
Score = 41.5 bits (93), Expect = 9e-05
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Frame = +1
Query: 445 NLYVKNLDDTI--DDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSP 591
NL+VKNLDD I + ++L + F+ FG I S + SKG+GFV FS P
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 37.5 bits (83), Expect = 0.001
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 10/145 (6%)
Frame = +1
Query: 88 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG---- 255
K EK K ++YV N L ++FE +G + ++ + S
Sbjct: 6 KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 256 --FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL----KS 417
F F+ FE+ +A+ A LNG +G L V + +L+ +Q+
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSF-QGNTLKVEYTHIVERYKNKLENGVDQIHHSNNE 124
Query: 418 ERLTRYQGVNLYVKNLDDTIDDERL 492
+ R+ + Y K T+ + R+
Sbjct: 125 KAKIRFSKIEKYTKETRPTVSEVRV 149
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 412 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTIT 525
K++R T+ +++YV NL T L + F PFG +
Sbjct: 10 KNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFS 47
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.0 bits (134), Expect = 1e-09
Identities = 29/75 (38%), Positives = 44/75 (58%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++V N G D +DE L F +Y + KV+ +G +RGFGFV+F+D D +A E N
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91
Query: 316 GKELVEGKPLYVGRA 360
GK + +P+ + RA
Sbjct: 92 GK-YIGSRPVKLSRA 105
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/46 (36%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 582
L+V NL + ++DE L + F+ + ++ KV+ + +G+++GFGFV F
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSF 77
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 58.0 bits (134), Expect = 1e-09
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR-GFGFVAFEDPDAAERACIEL 312
+Y+ N E +D +L ++ + G + + + NS GFGF F E AC L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
N +L GKP+ V RA + + G NL+V NLD +D+ L
Sbjct: 73 NQVKLF-GKPIRVNRASQ----------------DRGVNTLIGANLFVGNLDPLVDERVL 115
Query: 493 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
F+ G + A + E+GRSKG+GFV + S
Sbjct: 116 YDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
Score = 44.8 bits (101), Expect = 1e-05
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +1
Query: 70 GRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GN 246
G+ I ++ G + N++V N + +L D F G++ + +D+ G
Sbjct: 79 GKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGR 138
Query: 247 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK---KAERQKELKRK 399
S+G+GFV+++ + A+ A IE + + KP+ V A K K ER ++ +
Sbjct: 139 SKGYGFVSYDSFETAD-AAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAER 191
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 55.2 bits (127), Expect = 7e-09
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Frame = +1
Query: 94 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAF 273
R E+ + + TN+YV NF + + + +F YG + + +R F +V
Sbjct: 654 RGHEISVQIHVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQM 713
Query: 274 EDPDAAERACIELNGKELVEGKPL--YVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 447
PD A A ++L+ K L E P+ ++ ++ R + Y+G
Sbjct: 714 RKPDEAHNA-LQLHKKLLEEKYPIQVFISDPLRRTPRSGAV--------------YEGRE 758
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
LYV N+D ++++ + F +G + S ++ + KGFG+V ++
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTT 805
Score = 41.1 bits (92), Expect = 1e-04
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV N +++ ++ F YG++ S ++ K +GFG+V AE A +
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIP-KRFNQHKGFGYVVMTTNQDAENA-LSAA 816
Query: 316 GKEL-------VEGKPLY-VGRAQKKAERQKELKRKFEQLKSERLT-------RYQGVNL 450
GK+L V KP + + + + + L + FE +S +++ + + +L
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 451 YVKNLDDTIDDERLRKEFAPFGTI 522
V N+D T+++ RLR F +G +
Sbjct: 877 GVTNVDGTVNEARLRSLFESYGKL 900
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 49.6 bits (113), Expect = 3e-07
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 306
+ ++V+N + L + F G I V+ + G +RG+GFV F + A+RA
Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAK 64
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI-DD 483
EL K+L G+ L + A + ++ E+ + + + + L ++NL +I
Sbjct: 65 ELKNKKL-HGRILRLDFATPR--KRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKP 121
Query: 484 ERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 576
+ L F+ FG + K+ + GR GF FV
Sbjct: 122 QHLEPHFSKFGKVREIKIPTKGGGRMCGFAFV 153
Score = 47.6 bits (108), Expect = 1e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGE-KAKLFT-------NVYVKNFGE 159
E A ++ +++ L+G+++ + PRK E + + KA T + ++N
Sbjct: 57 EDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPW 116
Query: 160 DFSD-EMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEG 336
+ L+ F K+G++ K+ K G GF FV +D AAE A LNG E ++G
Sbjct: 117 SIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTE-IDG 175
Query: 337 KPLYVGRAQKK 369
+P+ V A K
Sbjct: 176 RPIAVDWAVSK 186
Score = 29.1 bits (62), Expect = 0.51
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSS 588
+G+ + ++ +D K G + AKV E GRSKGFGF+ F S
Sbjct: 495 KGLRANITEEEENLDKGHRLKRGKSGGVLKQAKVETEKAGAGRSKGFGFMQFIS 548
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 241 GNSRGFGFVAFEDPDAAERACIELNGKELVEGK 339
G S+GFGF+ F A A LNG+E+ K
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREITVKK 568
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.8 bits (111), Expect = 6e-07
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Frame = +1
Query: 121 KLFTNVYVKNFGE---DFSDEMLKDMF-EKYGRITSHKVMYKDDG-NSRGFGFVAFEDPD 285
++ T+ +V+ E + S+E +K + E+ RI H M K+ ++GF +V F D
Sbjct: 119 EILTDFFVRETSEMIKEVSEENIKPITTEQITRI--HMPMSKEKRFQNKGFAYVDFATED 176
Query: 286 AAERA--CIE--LNGKE-LVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 450
A + A C E LNG+ L++ + GR K A K ++S + + L
Sbjct: 177 ALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLS----KTASIQSSK--KEPSSIL 230
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVM-LED-GRSKGFGFVCF 582
+V NLD D L++ F G I ++M ED G+ KGFGFV F
Sbjct: 231 FVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERA 300
++V N + +D LK+ F + G+I ++M ++D G +GFGFV F D D +A
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKA 285
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 47.2 bits (107), Expect = 2e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV N SD L D+F G + ++ Y+ G S+GFG V FE+ + A + +LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 316 GKELVEGKPLYVGRA 360
G G+PL + A
Sbjct: 342 GYR-YGGRPLQLSYA 355
Score = 46.4 bits (105), Expect = 3e-06
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Frame = +1
Query: 178 LKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 357
LKD+F + G + + +G SRG G V A A L+ + + G+ L V R
Sbjct: 199 LKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM-GRTLEV-R 256
Query: 358 AQKKAERQKELKRKFEQLKSERLTRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTITSAK 534
+ A K E L + +YV NL D L F G++ A+
Sbjct: 257 LDRFAH------HKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRAR 310
Query: 535 VMLE-DGRSKGFGFVCFSS 588
+ E GRSKGFG V F +
Sbjct: 311 IAYEPTGRSKGFGVVQFEN 329
Score = 28.3 bits (60), Expect = 0.89
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Frame = +1
Query: 91 EREKELGEKAKLFTN---VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFG 261
ER+ LG K VYV N LK+ + G + + +++ +G S+G
Sbjct: 50 ERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCA 109
Query: 262 FVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 378
+ + + A A L+ ++ + G+ +Y+ +++ R
Sbjct: 110 IIEYSTAEEARTAIKTLSNQKFM-GRLVYIREDREQNAR 147
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.8 bits (106), Expect = 2e-06
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 3/127 (2%)
Frame = +1
Query: 1 KEAANKSIEKV-NGMLLNGKMVYVGRF-IPRKEREKELGEKAKLFTNVYVKNFGEDFSDE 174
KE ++ +E+V N + + M+ + +ER +L + K ++++N +++
Sbjct: 281 KENNDEHLERVTNDKIADASMLQKAENNVSEQERNIQLISETK---RLFLRNLTYSCAED 337
Query: 175 MLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 351
LK +F +G++ H + K N +GF ++ F D D A RA +EL+ K +G+ L+V
Sbjct: 338 DLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPF-QGRLLHV 396
Query: 352 GRAQKKA 372
A+ ++
Sbjct: 397 LPAKARS 403
Score = 40.7 bits (91), Expect = 2e-04
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 7/156 (4%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN------SRGFGFVAFEDPDAAER 297
+YVKN E + +F+ S + K D S GFGFV F+D +A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 298 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 477
A +NG +++G L + + + + E+++ + ++ +G + +KNL
Sbjct: 681 AMHAMNG-FVLDGHKLEIKLSHQGVDAAAEVRK-------QDSSKPKGTKILIKNLPFEA 732
Query: 478 DDERLRKEFAPFGTITSAKVMLEDGRS-KGFGFVCF 582
+ ++ +G + S +V + RS +GF F F
Sbjct: 733 TKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEF 768
Score = 36.3 bits (80), Expect = 0.003
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 5/163 (3%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNG-----KMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDF 165
K +A ++ +NG +L+G K+ + G + R+++ K K T + +KN +
Sbjct: 675 KASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQD-SSKPK-GTKILIKNLPFEA 732
Query: 166 SDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
+ + ++ + YG++ S +V K D ++RGF F F A A L L+ G+ L
Sbjct: 733 TKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLL-GRHL 791
Query: 346 YVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDT 474
+ A +++ E++ E ++ K L +T
Sbjct: 792 VLQYASNAT--MDDMQHAIEKMAKEANAEAAAPSITGKRLIET 832
Score = 29.5 bits (63), Expect = 0.39
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 18/165 (10%)
Frame = +1
Query: 142 VKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAA--ERACIELN 315
VKNF S E L +F +G + +++ G F+ D A + A +
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELG--RILIPPAGTIAIIEFLNAPDCRQAFSKLAYTRIK 567
Query: 316 GKEL-VEGKPLYVGRAQKKAERQKELKRKF--------EQLKSERLTRYQGVNLYVKNLD 468
L +E P V K + EL +K E++ +E + +YVKNL+
Sbjct: 568 SSILYLEKAPRDVFTTSFKQSGKPELAQKVNAVEATTSEKVGTEDIESLDTATIYVKNLN 627
Query: 469 DTIDDERLRKEFAPFGTITSAKVMLE-----DGR--SKGFGFVCF 582
+ E +K F P SA + + G+ S GFGFV F
Sbjct: 628 FSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEF 672
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 582
L+++NL + ++ L+ F PFG + + ++ KGF ++ F
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Frame = +1
Query: 289 AERACIELNGKELVEGKPLYV---GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 459
+++ ++ KEL+E K A K Q++L + E L++++ + ++YV
Sbjct: 2 SDQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKES-IDAQSVYVG 60
Query: 460 NLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
N+D ++ E L+ FA G++ ++ + G KGF ++ FS P
Sbjct: 61 NVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +1
Query: 79 IPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRG 255
+ +KE + L +++V ++ L+ +F K+G +T ++M + SRG
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 256 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 366
FGF++F + A A LN +E G+ L V +A++
Sbjct: 144 FGFLSFSTVEEATSAIDNLNSQEFY-GRVLNVQKAKR 179
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
G +L+V + + ++ L++ F+ FGT+T ++M E S+GFGF+ FS+
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 41.1 bits (92), Expect = 1e-04
Identities = 44/153 (28%), Positives = 66/153 (43%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
T ++V + E + D F+ YG+I K+M GFGFV ED A +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM-------NGFGFVEVEDARDARDIVND 56
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
GKE + G + V A+ + R++E R+ K R R G L V+NL + + +
Sbjct: 57 FQGKEFM-GSRIVVEPARGE-RRRRENFRESAASKYPR-PRRTGFRLIVENLSEDVSWQD 113
Query: 490 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
L+ G T E + G G V FS+
Sbjct: 114 LKDVMRKAGEPTFTDAHRE---NPGAGVVEFST 143
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 312
+Y+ N + ++ + ++ + +G + S +++ DG+S+GF F F++P AE A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 313 NGKELVEGK 339
+GK+ K
Sbjct: 372 DGKDTYGNK 380
Score = 33.9 bits (74), Expect = 0.018
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSP 591
+Y+ NL + ++++ + PFG + S +++ + DG SKGF F F +P
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNP 361
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 40.3 bits (90), Expect = 2e-04
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 306
T + VKN + L D F++ G + Y D+G RG F F P+ A+
Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQ 261
Query: 307 ELNGKELVEGKPLYV--GRAQKKAERQKELKRKFEQLKSER 423
LNG E + G+ L V R AER+K K K Q + R
Sbjct: 262 TLNGYE-INGRRLRVEWKRQLPAAEREKVEKAKKRQAEERR 301
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
VYV N + ++E + D+F++ G + S + V+ + G +G+GF + DP A A L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 313 N 315
N
Sbjct: 67 N 67
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 4e-04
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +1
Query: 94 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYKDDGN-SRGFGFV 267
REK + + ++ +++V + + ++ + +F +Y S K+M N SRG+GFV
Sbjct: 176 REKSISKASEY--SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFV 233
Query: 268 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAE 375
F D + + A E+ G ++ +P+ VG A K++
Sbjct: 234 RFTDENDQKSALAEMQG-QICGDRPIRVGLATPKSK 268
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.3 bits (85), Expect = 8e-04
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+++KN + E + D+F +YG + ++ + +RG FV +E+ A RAC +L+
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV--RQIRLGNTVQTRGTAFVVYENVQDARRACEKLS 71
Query: 316 GKELVE 333
G ++
Sbjct: 72 GYNFMD 77
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 37.5 bits (83), Expect = 0.001
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 306
T + +KN E+L +F + Y D+G RG F F P+ A+
Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291
Query: 307 ELNGKEL------VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNL 450
LNG E+ VE K +++ ER K+ KR E+ K++ + + N+
Sbjct: 292 VLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKRAVEERKNQLKSPFSVANI 345
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 37.5 bits (83), Expect = 0.001
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 13/104 (12%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKY----GRITSHKV---------MYKDDGNSRGFGFVAF 273
++YV ++E LK+MF+ Y RI + + + RGFGFV+F
Sbjct: 206 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 265
Query: 274 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 405
+ + RA E+NGK+ V L V A + ++Q + K E
Sbjct: 266 ANAEDQSRAIEEMNGKQ-VGDLTLVVKSAVFREDKQNDENEKNE 308
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +1
Query: 88 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFV 267
++ ++L L T V+V + S++ L+ F+ +GRI + K+ + +G GFV
Sbjct: 283 RQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF-----GKGCGFV 337
Query: 268 AFEDPDAAERACIELNG 318
+ + AAE+A + G
Sbjct: 338 QYSEKSAAEKAINTMQG 354
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 91 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFV 267
+ +K E NVY++ + SDE L ++G+++S K + + N +G+GF
Sbjct: 283 DNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFA 342
Query: 268 AFEDPDAA 291
FE+ +A
Sbjct: 343 CFEEEKSA 350
Score = 36.3 bits (80), Expect = 0.003
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCF 582
N+Y++ L DE L FG ++S+K ++ E KG+GF CF
Sbjct: 297 NVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACF 344
Score = 35.9 bits (79), Expect = 0.004
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
TN+Y+ N +++ + +F K +I S++V+ SRG GF +D AE +
Sbjct: 384 TNLYISNLPLHWNESDISTLF-KPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINK 442
Query: 310 LNGKELVEG-KPLYVGRA----QKKAERQKELKRKFEQLKSERLTRYQGVN 447
N L PL + A QKK + Q + +R + + LT+ N
Sbjct: 443 FNNFVLDPALPPLQIRFADSTDQKKFKGQTQKRRLWRAREYSVLTKGMTAN 493
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 35.5 bits (78), Expect = 0.006
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV F + L FE +G + + SR F FV +ED AE A E++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 316 GKELVEG 336
G+ L G
Sbjct: 69 GRRLERG 75
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFV 576
LYV D + L EF PFG + + + R S+ F FV
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFV 52
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.006
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +1
Query: 139 YVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNG 318
+V N D ++ L D F + G + V+ SRGFG+V FE D A + L+G
Sbjct: 97 HVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADTLS-AALALSG 154
Query: 319 KELVEGKPLYVGRAQKKAERQKE 387
++L+ G+P+ + A+ + +E
Sbjct: 155 EDLM-GRPVRITVAEPRRSFARE 176
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
N+Y+ N DD++ ERL+++F FG I R K FV F+S
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEIEYVNFF----REKNCAFVNFTS 458
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRI 210
N+Y+ N + + E LK+ FE++G I
Sbjct: 415 NIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.3 bits (75), Expect = 0.014
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGR-ITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+Y+ N D +++ + +F ++G + + V K+ G S+GF F+ +ED + A +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 313 NGKELVE 333
+L++
Sbjct: 93 TNVKLLD 99
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFV 576
+Y+ NLD ++++ + F+ FG ++ E G+SKGF F+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 33.9 bits (74), Expect = 0.018
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 430 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCF 582
R L V NL D +E LR F FG I + E GR+KGF FV +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.51
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 175 MLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
+L D+F KYG++ K++++ F F+ F+ AA A
Sbjct: 381 LLVDLFSKYGKVIDCKIIHQ--SKKPAFAFLRFDSQQAAYAA 420
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.68
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 43 LLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKY-GRITSH 219
+LNG +YV F+P K R L + L +V GE+ + K M Y G++ S
Sbjct: 313 ILNGNPIYVYSFVPHKIRLTHLVDAPLLGMSVCPLYPGEENPFKRFKIMLTVYTGKVISV 372
Query: 220 KVMYKDD 240
+V ++
Sbjct: 373 EVQLSEN 379
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
NVY + + + E L+ + +YG I S K + +R GFVA+ + A +A
Sbjct: 501 NVYFSHISDSLTTEELELILRQYGEIESIKYL-----KNRSSGFVAYTNISNAMKA 551
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK 234
NV++ N + ++ +++ F K+G+I K++ K
Sbjct: 300 NVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK 333
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +1
Query: 373 ERQKELKRKFEQL--KSERLTRYQGVNL--YVKNLDDTID 480
++++ELK KFE+L K+ER R QG L + DD ID
Sbjct: 70 KKEEELKSKFEKLRQKNERRRRTQGKTLAETLAEEDDQID 109
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 385 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLR-----KEFAPFGTITSAKVMLED 549
E + F+Q E ++ +NLY + DD D+E + + PF + S K ++ D
Sbjct: 186 EERAAFKQQIREEFVKHD-INLYPYDSDDA-DEEEINLNAAVRNLIPFAVVGSEKAIIVD 243
Query: 550 GR 555
GR
Sbjct: 244 GR 245
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.6
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = +1
Query: 67 VGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI---TSHKVMYKD 237
VG+ IP + ++ E AK+ T+ Y G D S + + E RI T K +Y +
Sbjct: 308 VGK-IPSELTSQDFKELAKM-TDGYS---GSDISIVVRDAIMEPVRRIHTATHFKEVYDN 362
Query: 238 DGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 339
N + DPDA E + +E+N ++++E K
Sbjct: 363 KSNRTLVTPCSPGDPDAFESSWLEVNPEDIMEPK 396
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +1
Query: 247 SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV---GRAQKKAERQKEL---KRKFEQ 408
S G F FE+ D A+ EL+GK++++ V + +K E +R+F++
Sbjct: 90 SLGLVFADFENVDGADLCVQELDGKQILKNHTFVVRKLNQLEKAFSTPDEFSFEEREFKE 149
Query: 409 LKSER--LTRYQGVNLYVKNLDDTIDDERLRKEFAP 510
+ R LT Y G + ++ + + RK P
Sbjct: 150 REHLRSWLTDYYGRDQFISYYGNRVSVNWNRKSDVP 185
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 82 PRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKD 186
P E EK++ +KAKL N + G+ ++ +D
Sbjct: 625 PSDEEEKDINDKAKLIRNALRQRMGQRMTEIRSRD 659
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.1
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 196 KYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLY--VGRAQKK 369
KY + ++ KV + D+GN+ F + ED L L E + K+
Sbjct: 589 KYKK-SADKVYFDDEGNAIPFYAMNTEDTFQKAGDPAALIASHLAEERKALEKADITDKE 647
Query: 370 AERQKELKRKFEQLKSERLTR 432
RQK+L++K + + ER+T+
Sbjct: 648 TVRQKQLEKKRRRQELERITQ 668
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 2.7
Identities = 24/90 (26%), Positives = 36/90 (40%)
Frame = +1
Query: 220 KVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 399
K Y D+ R F+ + E+A +G + G PL K ER K+ K+K
Sbjct: 83 KRRYADEYYDRTDPFIDDAELYIEEKAAATKDGFFVFSG-PLVAEGDTVKIERSKKTKKK 141
Query: 400 FEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
+ S V+ V + D + DD R
Sbjct: 142 KKTSLSNATHPAPAVSAVVASADASFDDSR 171
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 2.7
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +1
Query: 205 RITSHKVMYKDDGNSRG-FGFVAFEDP-DAAERACIELNGKELVEGKPLYVG---RAQKK 369
+IT+ KDD +GF F D +AER +EL E + +P Y+ + KK
Sbjct: 49 QITAASDASKDDNYDASIYGFDEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKK 108
Query: 370 AERQKELKRKFEQLKSERL 426
+R L R+ LK L
Sbjct: 109 RKRDLLLARERALLKKNEL 127
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 304 IELNGKELVEG--KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 477
++L +LVE K L+V + K E ++ K+ E LKS R +N Y+ L + I
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLK-ENSEKFKQNSESLKS----RVDNLNDYITKLQNEI 392
Query: 478 DDER 489
D+ R
Sbjct: 393 DECR 396
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTN 135
+ A +S + V ++NG PR ++ ELG K +F N
Sbjct: 515 RHTAVESGDVVKATIVNGPAAPYAEDRPRHKKNPELGNKKSIFAN 559
>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 64 YVGRFIPRKEREKELGEKAKLFTNVYVKNF 153
YV F+PR KEL + Y+ NF
Sbjct: 187 YVAAFLPRNTDVKELAAYGSIHNKPYITNF 216
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 397 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE--FAPFGTIT 525
KF Q+ T VN + NLD I+D + + + F P TIT
Sbjct: 418 KFAQVSDMCSTEIPWVNFFCDNLDICIEDVQFKSKAFFPPTVTIT 462
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR---GFGFVAFEDPDA 288
T V +KN F+ +ML+D + + T + + D ++ G+ F+ F +P +
Sbjct: 597 TTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNVGYAFINFIEPQS 652
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 220 KVMYKDDGNSRGF---GFVAFEDPDAAERACIELNGKELVEGKPL 345
KV Y +DG S + FE DAA A + + L+ G P+
Sbjct: 15 KVNYYEDGESGAILKTCCIEFESQDAARNALERQSTQRLISGNPI 59
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -1
Query: 332 STSSLPFNSMQALSAASGSSKATKPKPLELP--SSLYITL*LVMRPYFSNISFNISSEKS 159
S+SS+P S + S +S SS ++ P SS +IT + + S ++ SS S
Sbjct: 204 SSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITT-MSSSTFISTVTVTPSSSSS 262
Query: 158 S 156
S
Sbjct: 263 S 263
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +1
Query: 175 MLKDMFEKYGRITSHKVM---YKDDGNSRGFGFVAFED 279
MLK EK TS K+ Y+ S G GF+A ED
Sbjct: 1 MLKWAIEKDNYTTSEKIGLNDYRHVHESLGIGFIALED 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,681
Number of Sequences: 5004
Number of extensions: 43697
Number of successful extensions: 263
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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