Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0877
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 206 1e-53
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 202 1e-52
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 202 2e-52
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 200 7e-52
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 189 1e-48
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 159 1e-39
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 154 5e-38
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 148 2e-36
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 77 1e-14
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 76 2e-14
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 75 3e-14
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 71 4e-13
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 71 4e-13
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 71 4e-13
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 71 4e-13
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 71 8e-13
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 70 1e-12
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 69 2e-12
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 69 3e-12
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 66 2e-11
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 66 2e-11
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 64 9e-11
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 64 9e-11
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 64 9e-11
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 64 9e-11
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 63 2e-10
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 62 2e-10
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 62 2e-10
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 61 6e-10
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 60 1e-09
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 60 1e-09
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 59 3e-09
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 58 4e-09
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 58 4e-09
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 57 8e-09
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 57 1e-08
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 56 1e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 56 1e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 56 1e-08
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 56 1e-08
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 56 1e-08
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 56 2e-08
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 56 2e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 55 4e-08
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 54 5e-08
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 54 5e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 7e-08
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 54 7e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 54 1e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 54 1e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 54 1e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 54 1e-07
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 54 1e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 54 1e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 53 1e-07
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 52 2e-07
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 52 2e-07
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 52 2e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 52 3e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 52 3e-07
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 52 4e-07
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 52 4e-07
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 52 4e-07
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 51 5e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 51 7e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 51 7e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 51 7e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 51 7e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 51 7e-07
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 51 7e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 50 9e-07
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 50 2e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 50 2e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 50 2e-06
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 49 2e-06
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 49 3e-06
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 49 3e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 49 3e-06
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 49 3e-06
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 48 4e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 48 4e-06
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 48 4e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 48 6e-06
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 48 6e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 48 6e-06
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 48 6e-06
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 48 6e-06
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 47 1e-05
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 46 2e-05
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 46 3e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 46 3e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 46 3e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 45 3e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 45 4e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 45 4e-05
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 44 6e-05
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 44 6e-05
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 6e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 44 8e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 8e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 42 2e-04
At5g51300.1 68418.m06359 splicing factor-related contains simila... 42 2e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 42 2e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 2e-04
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 42 4e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 4e-04
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 41 5e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 41 5e-04
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 41 7e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 41 7e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 40 0.001
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.001
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 39 0.002
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 39 0.002
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 39 0.002
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 39 0.002
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 39 0.003
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 39 0.003
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.004
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 38 0.004
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 38 0.004
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 38 0.005
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 38 0.005
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 38 0.005
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 38 0.005
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 38 0.005
At2g47310.1 68415.m05906 flowering time control protein-related ... 38 0.005
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 38 0.005
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 38 0.005
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 38 0.005
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 38 0.007
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 37 0.009
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 37 0.009
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.009
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 37 0.012
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 37 0.012
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 37 0.012
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 36 0.015
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 36 0.020
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.020
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 36 0.027
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 35 0.047
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 35 0.047
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.047
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.047
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.047
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 34 0.062
At2g15500.1 68415.m01774 hypothetical protein 34 0.062
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 34 0.062
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 34 0.082
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 34 0.082
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 34 0.082
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.082
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.082
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 33 0.11
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 33 0.11
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 33 0.14
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.14
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.14
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.19
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.19
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.19
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 33 0.19
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 33 0.19
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 33 0.19
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 32 0.33
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.33
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 32 0.33
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 31 0.44
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 31 0.44
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 30 1.0
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 30 1.0
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 30 1.0
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 30 1.0
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 30 1.0
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.3
At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp... 30 1.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.3
At2g38250.1 68415.m04697 DNA-binding protein-related contains si... 29 1.8
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 2.3
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 2.3
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 29 2.3
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 29 2.3
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 29 2.3
At3g12930.1 68416.m01611 expressed protein contains Pfam domain ... 29 2.3
At4g12440.2 68417.m01969 adenine phosphoribosyltransferase, puta... 29 3.1
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 29 3.1
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 4.1
At1g72580.1 68414.m08393 hypothetical protein 28 4.1
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro... 28 5.4
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 28 5.4
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 28 5.4
At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2) ide... 27 7.1
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 27 7.1
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 27 7.1
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 7.1
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 7.1
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 7.1
At5g18610.1 68418.m02203 protein kinase family protein contains ... 27 9.4
At4g10610.1 68417.m01735 RNA-binding protein, putative 27 9.4
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 27 9.4
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 27 9.4
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 206 bits (502), Expect = 1e-53
Identities = 108/197 (54%), Positives = 138/197 (70%), Gaps = 1/197 (0%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 183
EAA +I+K+NGMLLN K VYVG F+ + +R+ GEK K FTNVYVKN E SDE L
Sbjct: 184 EAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPS-GEKVK-FTNVYVKNLSESLSDEELN 241
Query: 184 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 363
+F ++G TS +M +G S+GFGFV FE+ D A RA LNGK + K +VG+AQ
Sbjct: 242 KVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF-DDKEWFVGKAQ 300
Query: 364 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 543
KK+ER+ ELK+KFEQ E + QG NLYVKNLD+++ D++LR+ FAPFGTITS KVM
Sbjct: 301 KKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMR 360
Query: 544 E-DGRSKGFGFVCFSSP 591
+ G S+G GFV FS+P
Sbjct: 361 DPSGVSRGSGFVAFSTP 377
Score = 103 bits (246), Expect = 1e-22
Identities = 58/145 (40%), Positives = 86/145 (59%), Gaps = 10/145 (6%)
Frame = +1
Query: 10 ANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLF----------TNVYVKNFGE 159
A ++++ +NG + K +VG+ + ERE EL +K + +N+YVKN E
Sbjct: 277 AARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDE 336
Query: 160 DFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 339
+D+ L++ F +G ITS KVM G SRG GFVAF P+ A RA E+NGK +V K
Sbjct: 337 SVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVT-K 395
Query: 340 PLYVGRAQKKAERQKELKRKFEQLK 414
PLYV AQ+K +R+ L+ +F Q++
Sbjct: 396 PLYVALAQRKEDRKARLQAQFSQMR 420
Score = 99 bits (238), Expect = 1e-21
Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 1/194 (0%)
Frame = +1
Query: 10 ANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDM 189
A++++ ++N M LNG+ + V + R+ L + N+++KN + + L +
Sbjct: 99 ASRALNELNFMALNGRAIRVMYSV----RDPSLRKSG--VGNIFIKNLDKSIDHKALHET 152
Query: 190 FEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 369
F +G I S KV G S+G+GFV ++ +AA+ A +LNG L+ K +YVG K
Sbjct: 153 FSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGM-LLNDKQVYVGPFVHK 211
Query: 370 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE- 546
+R E++K N+YVKNL +++ DE L K F FG TS +M +
Sbjct: 212 LQRDP----SGEKVKF--------TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG 259
Query: 547 DGRSKGFGFVCFSS 588
+G+SKGFGFV F +
Sbjct: 260 EGKSKGFGFVNFEN 273
Score = 62.1 bits (144), Expect = 3e-10
Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 3/156 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 306
T++YV + +D L + F + G++ S +V S G+G+V + P A RA
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGV-NLYVKNLDDTIDD 483
ELN L G+ + V + R L++ GV N+++KNLD +ID
Sbjct: 105 ELNFMAL-NGRAIRV----MYSVRDPSLRK-------------SGVGNIFIKNLDKSIDH 146
Query: 484 ERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSS 588
+ L + F+ FG I S KV ++ G+SKG+GFV + +
Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDT 182
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 202 bits (494), Expect = 1e-52
Identities = 100/198 (50%), Positives = 138/198 (69%), Gaps = 1/198 (0%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+E A +I+K+NGMLLN K V+VG F+ R++R + FTNVYVKN ++ +D+ L
Sbjct: 182 EETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDEL 241
Query: 181 KDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
K F KYG I+S VM GNSR FGFV F P+AA A ++NG L E LYVGRA
Sbjct: 242 KKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGE-DVLYVGRA 300
Query: 361 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 540
QKK++R++EL+RKFEQ + R + QG NLY+KNLDD+++DE+L++ F+ +G +TS KVM
Sbjct: 301 QKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVM 360
Query: 541 L-EDGRSKGFGFVCFSSP 591
+ G S+GFGFV +S+P
Sbjct: 361 MNSQGLSRGFGFVAYSNP 378
Score = 119 bits (287), Expect = 1e-27
Identities = 67/148 (45%), Positives = 94/148 (63%), Gaps = 10/148 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEK---------AKLF-TNVYVKNF 153
EAA ++EK+NG+ L ++YVGR + +RE+EL K KL +N+Y+KN
Sbjct: 276 EAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNL 335
Query: 154 GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 333
+ +DE LK+MF +YG +TS KVM G SRGFGFVA+ +P+ A A E+NGK ++
Sbjct: 336 DDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGK-MIG 394
Query: 334 GKPLYVGRAQKKAERQKELKRKFEQLKS 417
KPLYV AQ+K ERQ L+ F Q++S
Sbjct: 395 RKPLYVALAQRKEERQAHLQSLFTQIRS 422
Score = 92.3 bits (219), Expect = 2e-19
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 1/197 (0%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 183
E A++++E +N + + + + + ++ L K NV++KN ++ L
Sbjct: 96 EDASRAMESLNYAPIRDRPIRI--MLSNRDPSTRLSGKG----NVFIKNLDASIDNKALY 149
Query: 184 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 363
+ F +G I S KV G S+G+GFV FE + A+ A +LNG L+ K ++VG
Sbjct: 150 ETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGM-LLNDKQVFVGHFV 208
Query: 364 KKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML 543
++ +R +SE N+YVKNL I D+ L+K F +G I+SA VM
Sbjct: 209 RRQDR----------ARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 258
Query: 544 -EDGRSKGFGFVCFSSP 591
+ G S+ FGFV F SP
Sbjct: 259 DQSGNSRSFGFVNFVSP 275
Score = 61.3 bits (142), Expect = 5e-10
Identities = 46/152 (30%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
+++YV + ++ L D+F + + + +V S G+ +V F +P+ A RA
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
LN + +P+ + + + S RL+ +G N+++KNLD +ID++
Sbjct: 105 LNYAP-IRDRPIRIMLSNRD--------------PSTRLSG-KG-NVFIKNLDASIDNKA 147
Query: 490 LRKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 582
L + F+ FGTI S KV ++ GRSKG+GFV F
Sbjct: 148 LYETFSSFGTILSCKVAMDVVGRSKGYGFVQF 179
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 202 bits (492), Expect = 2e-52
Identities = 100/198 (50%), Positives = 140/198 (70%), Gaps = 1/198 (0%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+E+A +I+K+NGML+N K V+VG FI R+ER ++ FTNVYVKN ++ ++ L
Sbjct: 186 EESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDEL 245
Query: 181 KDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
+ F K+G I+S VM GNSR FGFV FE +AA A ++NG L + LYVGRA
Sbjct: 246 RKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGD-DVLYVGRA 304
Query: 361 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 540
QKK+ER++EL+RKFEQ + R + QG NLY+KNLDD++DDE+L++ F+ +G +TS+KVM
Sbjct: 305 QKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVM 364
Query: 541 LE-DGRSKGFGFVCFSSP 591
L G S+GFGFV +S+P
Sbjct: 365 LNPQGMSRGFGFVAYSNP 382
Score = 121 bits (291), Expect = 4e-28
Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 10/148 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELG-----EKAKLF-----TNVYVKNF 153
EAA ++EK+NG+ L ++YVGR + ERE+EL E+ F N+Y+KN
Sbjct: 280 EAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNL 339
Query: 154 GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 333
+ DE LK+MF +YG +TS KVM G SRGFGFVA+ +P+ A RA E+NGK ++
Sbjct: 340 DDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK-MIG 398
Query: 334 GKPLYVGRAQKKAERQKELKRKFEQLKS 417
KPLY+ AQ+K +R+ L+ F Q+++
Sbjct: 399 RKPLYIALAQRKEDRRAHLQALFSQIRA 426
Score = 93.9 bits (223), Expect = 7e-20
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
N+++KN ++ L + F +G I S KV G S+G+GFV FE ++A+ A +L
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
NG L+ K ++VG ++ ER ++ E + R T N+YVKNL I ++ L
Sbjct: 197 NGM-LMNDKQVFVGHFIRRQERARD-----ENTPTPRFT-----NVYVKNLPKEIGEDEL 245
Query: 493 RKEFAPFGTITSAKVML-EDGRSKGFGFVCF 582
RK F FG I+SA VM + G S+ FGFV F
Sbjct: 246 RKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 200 bits (487), Expect = 7e-52
Identities = 105/197 (53%), Positives = 139/197 (70%), Gaps = 1/197 (0%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+++A +IEK+NG +LN K ++VG F+ ++ERE +K K FTNVYVKN E +D+ L
Sbjct: 184 EDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESA-ADKMK-FTNVYVKNLSEATTDDEL 241
Query: 181 KDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
K F +YG I+S VM DG SR FGFV FE+P+ A RA LNGK+ + K YVG+A
Sbjct: 242 KTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKF-DDKEWYVGKA 300
Query: 361 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 540
QKK+ER+ EL R++EQ S+ ++ G+NLYVKNLDDT+ DE+LR+ FA FGTITS KVM
Sbjct: 301 QKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVM 360
Query: 541 LE-DGRSKGFGFVCFSS 588
+ G SKG GFV FS+
Sbjct: 361 RDPSGTSKGSGFVAFSA 377
Score = 105 bits (252), Expect = 2e-23
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 2/196 (1%)
Frame = +1
Query: 10 ANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDM 189
A K+++K+N LNGKM+ + + R + G N++VKN + ++ L +
Sbjct: 100 AEKAMQKLNYSYLNGKMIRI-TYSSRDSSARRSG-----VGNLFVKNLDKSVDNKTLHEA 153
Query: 190 FEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 369
F G I S KV G SRG+GFV F+ D+A+ A +LNGK ++ K ++VG +K
Sbjct: 154 FSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK-VLNDKQIFVGPFLRK 212
Query: 370 AERQKEL-KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 546
ER+ K KF N+YVKNL + D+ L+ F +G+I+SA VM +
Sbjct: 213 EERESAADKMKF-------------TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD 259
Query: 547 -DGRSKGFGFVCFSSP 591
DG+S+ FGFV F +P
Sbjct: 260 GDGKSRCFGFVNFENP 275
Score = 104 bits (250), Expect = 4e-23
Identities = 59/147 (40%), Positives = 87/147 (59%), Gaps = 10/147 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFT----------NVYVKNF 153
E A +++E +NG + K YVG+ + ERE EL + + + N+YVKN
Sbjct: 276 EDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNL 335
Query: 154 GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 333
+ +DE L+++F ++G ITS KVM G S+G GFVAF A R E+NGK +V
Sbjct: 336 DDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK-MVG 394
Query: 334 GKPLYVGRAQKKAERQKELKRKFEQLK 414
GKPLYV AQ+K ER+ +L+ +F Q++
Sbjct: 395 GKPLYVALAQRKEERRAKLQAQFSQMR 421
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 189 bits (460), Expect = 1e-48
Identities = 99/185 (53%), Positives = 130/185 (70%), Gaps = 1/185 (0%)
Frame = +1
Query: 40 MLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSH 219
MLLN K VYVG F+ R+ER+ K K FTNVYVKN E +D+ LK+ F +YG+ITS
Sbjct: 1 MLLNDKQVYVGPFLRRQERDST-ANKTK-FTNVYVKNLAESTTDDDLKNAFGEYGKITSA 58
Query: 220 KVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 399
VM +G S+GFGFV FE+ D A RA LNG + + K YVGRAQKK+ER+ EL+ +
Sbjct: 59 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKF-DDKEWYVGRAQKKSERETELRVR 117
Query: 400 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFV 576
+EQ E ++Q NLYVKNLD +I DE+L++ F+PFGT+TS+KVM + +G SKG GFV
Sbjct: 118 YEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFV 177
Query: 577 CFSSP 591
F++P
Sbjct: 178 AFATP 182
Score = 107 bits (256), Expect = 7e-24
Identities = 61/145 (42%), Positives = 87/145 (60%), Gaps = 10/145 (6%)
Frame = +1
Query: 10 ANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELG--------EKAKLF--TNVYVKNFGE 159
A +++E +NG + K YVGR + ERE EL E A F +N+YVKN
Sbjct: 82 AARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDP 141
Query: 160 DFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 339
SDE LK++F +G +TS KVM +G S+G GFVAF P+ A A +L+GK ++E K
Sbjct: 142 SISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK-MIESK 200
Query: 340 PLYVGRAQKKAERQKELKRKFEQLK 414
PLYV AQ+K +R+ L+ +F Q++
Sbjct: 201 PLYVAIAQRKEDRRVRLQAQFSQVR 225
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 159 bits (387), Expect = 1e-39
Identities = 82/198 (41%), Positives = 132/198 (66%), Gaps = 1/198 (0%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
++AA+ +I+ +N ++ K +YVG+F+ + +R K EK +TN+Y+KN D S+++L
Sbjct: 162 EDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP-EEK---YTNLYMKNLDADVSEDLL 217
Query: 181 KDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
++ F ++G+I S + ++ RG+ FV F++P+ A RA +NG + K LYVGRA
Sbjct: 218 REKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKF-GSKCLYVGRA 276
Query: 361 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 540
QKKAER++ L+ +F++ E+ + N+YVKN++ + +E LRK F+ GTITS K+M
Sbjct: 277 QKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLM 336
Query: 541 L-EDGRSKGFGFVCFSSP 591
E G+SKGFGFVCFS+P
Sbjct: 337 CDEKGKSKGFGFVCFSTP 354
Score = 122 bits (295), Expect = 1e-28
Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 2/199 (1%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKE-REKELGEKAKLFTNVYVKNFGEDFSDEM 177
++ AN +IEK N LLNGKM+ V + + R +G NV+VKN E ++ +
Sbjct: 75 RQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-------NVFVKNLPESVTNAV 127
Query: 178 LKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 357
L+DMF+K+G I S KV +DG SRG+GFV FE DAA A LN +V K +YVG+
Sbjct: 128 LQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN-STIVADKEIYVGK 186
Query: 358 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 537
KK +R K E+ T NLY+KNLD + ++ LR++FA FG I S +
Sbjct: 187 FMKKTDRVK---------PEEKYT-----NLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 538 MLEDGR-SKGFGFVCFSSP 591
++ R +G+ FV F +P
Sbjct: 233 AKDENRLCRGYAFVNFDNP 251
Score = 94.3 bits (224), Expect = 5e-20
Identities = 57/143 (39%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKERE-------KELGEKAKLF---TNVYVKNF 153
E A ++ E VNG K +YVGR + ERE KE E+ K+ +N+YVKN
Sbjct: 252 EDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNV 311
Query: 154 GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 333
++E L+ F + G ITS K+M + G S+GFGFV F P+ A A +G ++
Sbjct: 312 NVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHG-QMFH 370
Query: 334 GKPLYVGRAQKKAERQKELKRKF 402
GKPLYV AQKK +R+ +L+ +F
Sbjct: 371 GKPLYVAIAQKKEDRKMQLQVQF 393
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 154 bits (373), Expect = 5e-38
Identities = 88/187 (47%), Positives = 124/187 (66%), Gaps = 2/187 (1%)
Frame = +1
Query: 34 NGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRIT 213
NG L+ + ++V F+ R + +K+++FTNVYVKN E +D LK +F ++G IT
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQ-----WDKSRVFTNVYVKNLVETATDADLKRLFGEFGEIT 146
Query: 214 SHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 393
S VM +G SR FGFV FE +AA A ++NG +V+ K L+VGRAQ+K R ++LK
Sbjct: 147 SAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNG-VVVDEKELHVGRAQRKTNRTEDLK 205
Query: 394 RKFEQLKSER-LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGF 567
KFE K R + +G+NLYVKNLDD++D+ +L + F+ FGTITS KVM+ +G SKG
Sbjct: 206 AKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGV 265
Query: 568 GFVCFSS 588
GFV FS+
Sbjct: 266 GFVEFST 272
Score = 89.8 bits (213), Expect = 1e-18
Identities = 52/144 (36%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFT-----------NVYVKN 150
EAA +IEK+NG++++ K ++VGR + R ++L K +L N+YVKN
Sbjct: 170 EAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKN 229
Query: 151 FGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELV 330
+ + L+++F ++G ITS KVM +G S+G GFV F + A +A +++NGK +V
Sbjct: 230 LDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGK-MV 288
Query: 331 EGKPLYVGRAQKKAERQKELKRKF 402
KP+YV AQ K + + L+ +F
Sbjct: 289 GNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 78.6 bits (185), Expect = 3e-15
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 1/151 (0%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
NV+VKN E ++ L DMF +G++ S KV G S+G+GFV F + AC
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
NG L+ + ++V + + K R F N+YVKNL +T D L
Sbjct: 92 NG-TLIRNQHIHVCPFVSRGQWDK--SRVF-------------TNVYVKNLVETATDADL 135
Query: 493 RKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 582
++ F FG ITSA VM + +G+S+ FGFV F
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNF 166
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSS 588
N++VKNLD++ID+++L F+ FG + S KV + G SKG+GFV F S
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYS 80
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 148 bits (359), Expect = 2e-36
Identities = 86/198 (43%), Positives = 128/198 (64%), Gaps = 2/198 (1%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+++A + ++G ++ GK ++V +FI + ER G + TNVYVKN E +D+ L
Sbjct: 161 EQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDS--TNVYVKNLIETVTDDCL 218
Query: 181 KDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
+F +YG ++S VM G SRGFGFV F +P+ A++A L G +L K L+VG+A
Sbjct: 219 HTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQL-GSKKLFVGKA 277
Query: 361 QKKAERQKELKRKF-EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 537
KK ER++ LK+KF + ++ R+ NLYVKNL +++++ RLR+ F +G I SAKV
Sbjct: 278 LKKDERREMLKQKFSDNFIAKPNMRWS--NLYVKNLSESMNETRLREIFGCYGQIVSAKV 335
Query: 538 ML-EDGRSKGFGFVCFSS 588
M E+GRSKGFGFVCFS+
Sbjct: 336 MCHENGRSKGFGFVCFSN 353
Score = 94.3 bits (224), Expect = 5e-20
Identities = 54/143 (37%), Positives = 90/143 (62%), Gaps = 9/143 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEK------AK---LFTNVYVKNFG 156
E A K++E + G+ L K ++VG+ + + ER + L +K AK ++N+YVKN
Sbjct: 253 ENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLS 312
Query: 157 EDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEG 336
E ++ L+++F YG+I S KVM ++G S+GFGFV F + + +++A LNG LV+G
Sbjct: 313 ESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNG-FLVDG 371
Query: 337 KPLYVGRAQKKAERQKELKRKFE 405
KP+ V A++K +R K L++ F+
Sbjct: 372 KPIVVRVAERKEDRIKRLQQYFQ 394
Score = 93.5 bits (222), Expect = 1e-19
Identities = 59/156 (37%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI 306
F N+YVKN + L+ MF +G I S KV+ +++G S+GFGFV F+ +A A
Sbjct: 111 FANLYVKNLDSSITSSCLERMFCPFGSILSCKVV-EENGQSKGFGFVQFDTEQSAVSARS 169
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 486
L+G +V GK L+V + K ER + N+YVKNL +T+ D+
Sbjct: 170 ALHG-SMVYGKKLFVAKFINKDER------------AAMAGNQDSTNVYVKNLIETVTDD 216
Query: 487 RLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSP 591
L F+ +GT++S VM + GRS+GFGFV F +P
Sbjct: 217 CLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNP 252
Score = 77.4 bits (182), Expect = 7e-15
Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 1/155 (0%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERAC 303
F ++YV + D +++ L D F + S H G S + ++ F+ P +A A
Sbjct: 20 FGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAM 79
Query: 304 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 483
LN +L +GK + + +Q+ L R TR NLYVKNLD +I
Sbjct: 80 TRLNHSDL-KGKAMRIMWSQR-------------DLAYRRRTRTGFANLYVKNLDSSITS 125
Query: 484 ERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
L + F PFG+I S KV+ E+G+SKGFGFV F +
Sbjct: 126 SCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDT 160
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 76.6 bits (180), Expect = 1e-14
Identities = 56/162 (34%), Positives = 81/162 (50%), Gaps = 3/162 (1%)
Frame = +1
Query: 112 EKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDA 288
E+AKLF V N D + L +FE+ G + +V+Y +D SRGFGFV +
Sbjct: 111 EEAKLF----VGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 289 AERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLD 468
AE+A + N E V G+ L V RA + R + R ++ +YV NL
Sbjct: 167 AEKAVEKFNSFE-VNGRRLTVNRAAPRGSRPERQPRVYD----------AAFRIYVGNLP 215
Query: 469 DTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSS 588
+D RL + F+ G + A+V+ E GRS+GFGFV S+
Sbjct: 216 WDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN 257
Score = 66.9 bits (156), Expect = 1e-11
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 183
E A K++EK N +NG+ + V R PR R + +YV N D L+
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLE 224
Query: 184 DMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
+F ++G++ +V+ ++ G SRGFGFV + + A L+G+ L EG+ + V A
Sbjct: 225 RLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNL-EGRAIKVNVA 283
Query: 361 QKKAER 378
+++ R
Sbjct: 284 EERTRR 289
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 76.2 bits (179), Expect = 2e-14
Identities = 56/164 (34%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Frame = +1
Query: 103 ELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFED 279
E E+AKLF V N D + + L +FE+ G + +V+Y ++ SRGFGFV
Sbjct: 145 EPSEEAKLF----VGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 280 PDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 459
D AE A + N +L G+ L V +A + R + R +E +YV
Sbjct: 201 VDEAETAVEKFNRYDL-NGRLLTVNKAAPRGSRPERAPRVYE----------PAFRVYVG 249
Query: 460 NLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
NL +D+ RL + F+ G + A+V+ E GRS+GFGFV S
Sbjct: 250 NLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMS 293
Score = 72.5 bits (170), Expect = 2e-13
Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLK 183
+ A ++EK N LNG+++ V + PR R + + VYV N D + L+
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLE 261
Query: 184 DMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
+F ++G++ +V+Y ++ G SRGFGFV D D A L+G+ L EG+ + V A
Sbjct: 262 QLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNL-EGRAIRVNVA 320
Query: 361 QKKAERQ 381
+++ R+
Sbjct: 321 EERPPRR 327
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
L+V NL ++ + L F GT+ A+V+ E +S+GFGFV SS
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 75.4 bits (177), Expect = 3e-14
Identities = 60/181 (33%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Frame = +1
Query: 73 RFIP-----RKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-K 234
RFIP +E+ L ++ VY+ N ++E L + E++G + +VMY K
Sbjct: 52 RFIPYAVTETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDK 111
Query: 235 DDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLK 414
G SR FGF + + A +LNG VEG+ + V +K +L L+
Sbjct: 112 YSGRSRRFGFATMKSVEDANAVVEKLNGNT-VEGREIKVNITEKPIASSPDLS----VLQ 166
Query: 415 SERLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFS 585
SE +YV NL T+ E L F+ G + SAKV G SK GFGFV FS
Sbjct: 167 SEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFS 226
Query: 586 S 588
S
Sbjct: 227 S 227
Score = 56.0 bits (129), Expect = 2e-08
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVG---RFIPRKEREKELGEKAKLFTN----VYVKNFGED 162
E AN +EK+NG + G+ + V + I L + F + VYV N +
Sbjct: 128 EDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKT 187
Query: 163 FSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 339
+ EML+++F + G++ S KV S GFGFV F + E A + LN L+EG+
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN-NSLLEGQ 246
Query: 340 PLYVGRA 360
+ V +A
Sbjct: 247 KIRVNKA 253
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 71.3 bits (167), Expect = 4e-13
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ D +E L+D F YG + +M + G +RGFGF+ F DP +ER ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD- 66
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 483
K +++G+ + +A + + Q+ LKR + G ++V L +I +
Sbjct: 67 --KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 484 ERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSS 588
E + F FGTI VM + R +GFGF+ F S
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERAC--- 303
++V ++E K+ F+++G I VMY + RGFGF+ F+ DA +R
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 304 -IELNGKELVEGK 339
ELNGK LVE K
Sbjct: 172 FHELNGK-LVEVK 183
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 71.3 bits (167), Expect = 4e-13
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ D +E L+D F YG + +M + G +RGFGF+ F DP +ER ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD- 66
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 483
K +++G+ + +A + + Q+ LKR + G ++V L +I +
Sbjct: 67 --KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 484 ERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSS 588
E + F FGTI VM + R +GFGF+ F S
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERAC--- 303
++V ++E K+ F+++G I VMY + RGFGF+ F+ DA +R
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 304 -IELNGKELVEGK 339
ELNGK LVE K
Sbjct: 172 FHELNGK-LVEVK 183
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 71.3 bits (167), Expect = 4e-13
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ D +E L+D F YG + +M + G +RGFGF+ F DP +ER ++
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD- 66
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 483
K +++G+ + +A + + Q+ LKR + G ++V L +I +
Sbjct: 67 --KHIIDGRTVEAKKAVPR-DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 484 ERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSS 588
E + F FGTI VM + R +GFGF+ F S
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERAC--- 303
++V ++E K+ F+++G I VMY + RGFGF+ F+ DA +R
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 304 -IELNGKELVEGK 339
ELNGK LVE K
Sbjct: 172 FHELNGK-LVEVK 183
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 71.3 bits (167), Expect = 4e-13
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V N + L +FE G + +V+Y K G SRGFGFV E A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY---------QGVNLYVKNL 465
NG EL +G+PL V +R+ R + Y G +YV NL
Sbjct: 153 NGYEL-DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 466 DDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
+DD L F+ G + A+V+ + GRSKGFGFV + S
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 109 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPD 285
G A VYV N D L+ +F + G++ +V+Y +D G S+GFGFV ++
Sbjct: 197 GSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 256
Query: 286 AAERACIELNGKELVEGKPLYVGRAQKKAERQK 384
+ A L+G +L +G+ + V A+ + R++
Sbjct: 257 EVQNAIKSLDGADL-DGRQIRVSEAEARPPRRQ 288
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 70.5 bits (165), Expect = 8e-13
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V + ++ L++ F YG ++ VM K G RGFGFV F DP +R L
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV---L 64
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN----LYVKNLDDTID 480
K ++ + + V RA + E+Q + + L + R + N ++V L T+
Sbjct: 65 QEKHSIDTREVDVKRAMSREEQQ--VSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 481 DERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
DE R+ F +G +T +M + R +GFGFV F S
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERACIEL 312
++V +DE + FE YG +T +MY N RGFGFV+F+ DA + + +
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVD-SVLHK 170
Query: 313 NGKELVEGKPLYVGRAQKK 369
+L GK + V RA K
Sbjct: 171 TFHDL-SGKQVEVKRALPK 188
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 591
L+V + D+++LR+ F +G ++ A VM + GR +GFGFV FS P
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 70.1 bits (164), Expect = 1e-12
Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 11/175 (6%)
Frame = +1
Query: 97 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAF 273
E++ E A +++ D +E L++ F KYG + +M + G +RGFGF+ F
Sbjct: 4 EEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 274 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN-- 447
DP AER ++ K +++G+ + +A + + Q+ LKR + ++ G N
Sbjct: 64 ADPSVAERVIMD---KHIIDGRTVEAKKAVPR-DDQQVLKRHASPM--HLISPSHGGNGG 117
Query: 448 ------LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSS 588
++V L +I + + F FGTI VM + R +GFGF+ F S
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 172
Score = 40.7 bits (91), Expect = 7e-04
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
L++ + D+ERL++ F +G + A +M + GR++GFGF+ F+ P
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADP 66
Score = 36.3 bits (80), Expect = 0.015
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAE----RA 300
++V ++ K+ F+++G I VMY + RGFGF+ F+ ++ + +
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 301 CIELNGKELVEGK 339
ELNGK +VE K
Sbjct: 184 FHELNGK-MVEVK 195
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 69.3 bits (162), Expect = 2e-12
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 306
+++V + D SD +L + F EKY + + KV+ + G S+G+GFV F D + +A
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG----VNLYVKNLDDT 474
E+NG + + + +G A + + +++ + S TR +G ++V LD +
Sbjct: 260 EMNGVK-CSSRAMRIGPATPR--KTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSS 316
Query: 475 IDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
+ DE L++ F+ FG I S K+ + KG GFV F
Sbjct: 317 VTDEDLKQPFSEFGEIVSVKIPV----GKGCGFVQF 348
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Frame = +1
Query: 208 ITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 384
I S KV+ K +G+S G+GFV FE D A++ E NG + + + +K
Sbjct: 131 IVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEK 190
Query: 385 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFA-PFGTITSAKVMLE--DGR 555
L+ L +++V +L + D L + F+ + ++ +AKV+L+ GR
Sbjct: 191 RLENNGPDL-----------SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGR 239
Query: 556 SKGFGFVCF 582
SKG+GFV F
Sbjct: 240 SKGYGFVRF 248
Score = 37.9 bits (84), Expect = 0.005
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Frame = +1
Query: 16 KSIEKVNGMLLNGKMVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGE 159
K++ ++NG+ + + + +G PRK +++ G E + T ++V
Sbjct: 256 KAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDS 315
Query: 160 DFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNG 318
+DE LK F ++G I S K+ +G GFV F + AE A +LNG
Sbjct: 316 SVTDEDLKQPFSEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEKLNG 363
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 68.5 bits (160), Expect = 3e-12
Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 306
+++V + D SD +L + F EKY + + KV+ + G S+G+GFV F D + +A
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG----VNLYVKNLDDT 474
E+NG + + + +G A + + +++ + + LTR +G ++V LD +
Sbjct: 258 EMNGVK-CSSRAMRIGPATPR--KTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSS 314
Query: 475 IDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
+ DE L++ F FG I S K+ + KG GFV F
Sbjct: 315 VTDEDLKQPFNEFGEIVSVKIPV----GKGCGFVQF 346
Score = 48.8 bits (111), Expect = 3e-06
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Frame = +1
Query: 208 ITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 384
I S KV+ K++G S G+GFV FE D A++ E NG + + + +K
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEK 188
Query: 385 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFA-PFGTITSAKVMLE--DGR 555
L+ L +++V +L + D L + F+ + ++ +AKV+L+ GR
Sbjct: 189 RLENNGPDL-----------SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGR 237
Query: 556 SKGFGFVCF 582
SKG+GFV F
Sbjct: 238 SKGYGFVRF 246
Score = 37.1 bits (82), Expect = 0.009
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Frame = +1
Query: 16 KSIEKVNGMLLNGKMVYVGRFIPRKER--EKELG----------EKAKLFTNVYVKNFGE 159
K++ ++NG+ + + + +G PRK +++ G E + T ++V
Sbjct: 254 KAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDS 313
Query: 160 DFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNG 318
+DE LK F ++G I S K+ +G GFV F + AE A +LNG
Sbjct: 314 SVTDEDLKQPFNEFGEIVSVKIPV-----GKGCGFVQFVNRPNAEEALEKLNG 361
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ + S++ L+D F +G + +M + G +RGFGFV F DP+ AER +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL- 66
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELK-RKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
K +++GK + A+K R + K ++V L ++ +
Sbjct: 67 --KHIIDGK---IVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 490 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+K FA FG IT VM + R +GFGF+ + S
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 156
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADP 57
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC--- 303
++V ++ K F ++G IT VMY RGFGF++++ +A ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 304 -IELNGKELVEGK 339
ELNGK +VE K
Sbjct: 168 FHELNGK-MVEVK 179
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ + S++ L+D F +G + +M + G +RGFGFV F DP+ AER +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL- 66
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELK-RKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
K +++GK + A+K R + K ++V L ++ +
Sbjct: 67 --KHIIDGK---IVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 490 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+K FA FG IT VM + R +GFGF+ + S
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDS 156
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADP 57
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC--- 303
++V ++ K F ++G IT VMY RGFGF++++ +A ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 304 -IELNGKELVEGK 339
ELNGK +VE K
Sbjct: 168 FHELNGK-MVEVK 179
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 63.7 bits (148), Expect = 9e-11
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VYV N ++ +L+++F G + S K++ KD + +GFV + D +A A + L
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS---YGFVHYFDRRSAALAILSL 116
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
NG+ L G+P+ V A +R E S N++V +L + D L
Sbjct: 117 NGRHLF-GQPIKVNWAYATGQR--------EDTSSH-------FNIFVGDLSPEVTDATL 160
Query: 493 RKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
+ F+ F + + A+VM + GRS+GFGFV F
Sbjct: 161 YQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Score = 48.4 bits (110), Expect = 4e-06
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+ +A +I +NG L G+ + V +RE + + F N++V + + +D L
Sbjct: 106 RRSAALAILSLNGRHLFGQPIKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDATL 160
Query: 181 KDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKEL---------- 327
F + + +VM+ + G SRGFGFV+F + A+ A E+NGK L
Sbjct: 161 YQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Query: 328 VEGKPLYVGRAQKKAERQKELKRKFEQLKSERL------TRYQGVNLYVKNLDDTIDDER 489
+G + + EL + E L Q +YV NL +
Sbjct: 221 TKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLD 280
Query: 490 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
L + F G +V ++ R KGFGFV +++
Sbjct: 281 LHRYFHALGAGVIEEVRVQ--RDKGFGFVRYNT 311
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 63.7 bits (148), Expect = 9e-11
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ +D ++ + F KYG IT +M + G RGFGF+ F DP ++ +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV---I 77
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
++ GK + + R K + K +K+++ ++V + T+ ++ L
Sbjct: 78 EDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTKK--------IFVGGIPSTVTEDEL 125
Query: 493 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
+ FA +G + +V+ E RS+GFGFV F S
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
Score = 52.8 bits (121), Expect = 2e-07
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Frame = +1
Query: 43 LLNGKMVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSH 219
++NGK V + R IP+ + + K K ++V +++ LKD F KYG + H
Sbjct: 82 VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 220 KVMYKDDGN-SRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKR 396
+V+ + N SRGFGFV F+ + + + N ++ + + KKAE +K L R
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV-----EIKKAEPKKSLNR 193
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 63.7 bits (148), Expect = 9e-11
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ +D ++ + F KYG IT +M + G RGFGF+ F DP ++ +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKV---I 77
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
++ GK + + R K + K +K+++ ++V + T+ ++ L
Sbjct: 78 EDTHVINGKQVEIKRTIPKGAGGNQSK----DIKTKK--------IFVGGIPSTVTEDEL 125
Query: 493 RKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
+ FA +G + +V+ E RS+GFGFV F S
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
Score = 50.8 bits (116), Expect = 7e-07
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +1
Query: 43 LLNGKMVYVGRFIPRKEREKELGE-KAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSH 219
++NGK V + R IP+ + + K K ++V +++ LKD F KYG + H
Sbjct: 82 VINGKQVEIKRTIPKGAGGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 220 KVMYKDDGN-SRGFGFVAFEDPDAAE 294
+V+ + N SRGFGFV F+ + +
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVD 164
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 63.7 bits (148), Expect = 9e-11
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+++ D + +L++ F +G + VM K G RGFGFVAF DP +R L
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV---L 64
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKR-KFEQLKS-ERLTRYQGVNLYVKNLDDTIDDE 486
K ++ + + V RA + E+ + F ++ + + ++V L + +
Sbjct: 65 QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSD 124
Query: 487 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
R F +G ++ A +M++ R +GFGFV F S
Sbjct: 125 EFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 591
L++ + D+ LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAE----RACIELNGKEL 327
SDE + FE YG ++ +M + RGFGFV+F+ D+ + + +LNGK++
Sbjct: 123 SDEF-RAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 62.9 bits (146), Expect = 2e-10
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIEL 312
+YV N + L DMF+ +G + S +V G SRG G+V ++A+ A L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 483
+G E V G+ + R + + +R E L S +++ Y+ + +YV NL
Sbjct: 170 DGTE-VGGREM---RVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 225
Query: 484 ERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSS 588
+ LR F+ FGTI S +V+ + GR++ F F+ F+S
Sbjct: 226 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTS 262
Score = 38.3 bits (85), Expect = 0.004
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Frame = +1
Query: 199 YGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 378
Y + S K+ + +S F + P A+ I+++ EL L + ++ +
Sbjct: 33 YSYLESLKLQFS---SSNSFHHSSLSRPFVAQPLQIKVSSSEL---SVLDEEKEEEVVKG 86
Query: 379 QKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDG 552
+ E + K+E + + + LYV N+ + D +L F PFGT+ S +V + G
Sbjct: 87 EAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTG 146
Query: 553 RSKGFGFVCFSS 588
S+G G+V S
Sbjct: 147 ESRGSGYVTMGS 158
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 62.5 bits (145), Expect = 2e-10
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDPDAAERACIE 309
+++ D ++E LK+ F +G + V+ KD G +RGFGFV F DP AE I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIE-AVILKDRTTGRARGFGFVVFADPAVAE---IV 63
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
+ K ++G+ + +A + ++ + ++ + ++V L ++ +
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123
Query: 490 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSS 588
+ F FGT T VM + R +GFGF+ + S
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSP 591
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADP 57
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERACI-- 306
++V ++ K FE++G T VMY + RGFGF+ ++ +A E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 307 --ELNGKELVEGK 339
ELNGK +VE K
Sbjct: 170 FHELNGK-MVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 62.5 bits (145), Expect = 2e-10
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDPDAAERACIE 309
+++ D ++E LK+ F +G + V+ KD G +RGFGFV F DP AE I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIE-AVILKDRTTGRARGFGFVVFADPAVAE---IV 63
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
+ K ++G+ + +A + ++ + ++ + ++V L ++ +
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123
Query: 490 LRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSS 588
+ F FGT T VM + R +GFGF+ + S
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS 158
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/51 (39%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSP 591
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADP 57
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAERACI-- 306
++V ++ K FE++G T VMY + RGFGF+ ++ +A E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 307 --ELNGKELVEGK 339
ELNGK +VE K
Sbjct: 170 FHELNGK-MVEVK 181
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 60.9 bits (141), Expect = 6e-10
Identities = 51/164 (31%), Positives = 75/164 (45%), Gaps = 3/164 (1%)
Frame = +1
Query: 106 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 282
L A + T +Y N + L + + + +V+Y +D G SRGF FV +
Sbjct: 77 LDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNV 136
Query: 283 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKN 462
+ L+G E Y+GRA K K K E L E T ++ L+V N
Sbjct: 137 EDCNIIIDNLDGTE-------YLGRALKVNFADKPKPNK-EPLYPE--TEHK---LFVGN 183
Query: 463 LDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
L T+ E L F G + A+V+ + GRS+G+GFVC+SS
Sbjct: 184 LSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
Score = 46.4 bits (105), Expect = 1e-05
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +1
Query: 64 YVGRFIPRKEREKELGEKAKLFTN----VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY 231
Y+GR + +K K L+ ++V N + E L F + G + +V++
Sbjct: 151 YLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVF 210
Query: 232 KDD-GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 369
D G SRG+GFV + E A L+G EL EG+ + V AQ K
Sbjct: 211 DGDTGRSRGYGFVCYSSKAEMETALESLDGFEL-EGRAIRVNLAQGK 256
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 3/147 (2%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEK-YGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
++V + + +D ML D F+ YG + KV+ + G S+G+GFV F D + RA E
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 310 LNGKELVEGKPLYVG-RAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 486
+NG + +P+ +G A K A + + Q + ++V LD + D+
Sbjct: 216 MNG-QYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 487 RLRKEFAPFGTITSAKVMLEDGRSKGF 567
L+ F FG + K+ G+ GF
Sbjct: 275 ELKSIFGQFGELLHVKI--PPGKRCGF 299
Score = 47.2 bits (107), Expect = 8e-06
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 5/156 (3%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
++++ + + + + +F + G TS KV+ K G S G+GF+ F AER
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 310 LNGKELVEGKPLY-VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 486
NG + + + + AQ A +++F+ T ++V +L + D
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAG-----EKRFQ-------TEGPDHTIFVGDLAPEVTDY 168
Query: 487 RLRKEFA-PFGTITSAKVMLE--DGRSKGFGFVCFS 585
L F +G++ AKV+L+ GRSKG+GFV F+
Sbjct: 169 MLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
Score = 31.5 bits (68), Expect = 0.44
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
T ++V + +D+ LK +F ++G + K+ + GFV + + +AE A
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIP-----PGKRCGFVQYANKASAEHALSV 314
Query: 310 LNGKEL-VEGKPLYVGRAQKKAERQKE 387
LNG +L + L GR+ K Q +
Sbjct: 315 LNGTQLGGQSIRLSWGRSPNKQSDQAQ 341
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 59.7 bits (138), Expect = 1e-09
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V ++ S+E LK F +YG + V K G RGFGFV F + +A L
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA---L 64
Query: 313 NGKELVEGKPLYVGRAQKKAERQKE------LKRKFEQLKSE-RLTRYQGV-----NLYV 456
+ GKP+ V +A +K E ++ L+RK +Q+ R GV ++V
Sbjct: 65 RDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFV 124
Query: 457 KNLDDTIDDERLRKEFAPFGTITSAKVMLEDG---RSKGFGFVCFSS 588
L +E + F FG T V++ DG R +GFGFV + S
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDV-VVMHDGVTNRPRGFGFVTYDS 170
Score = 41.5 bits (93), Expect = 4e-04
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACIEL 312
++V + ++E K FE++GR T VM+ N RGFGFV ++ D+ E ++
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE-VVMQS 180
Query: 313 NGKELVEGKPLYVGRAQKK 369
N EL + K + V RA K
Sbjct: 181 NFHELSD-KRVEVKRAIPK 198
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 58.8 bits (136), Expect = 3e-09
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VY N ++ +L+++F G I S K++ KD + +GFV + D A A + L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
NG+ + G+P+ V A +R E S N++V +L + D L
Sbjct: 121 NGRHIF-GQPMKVNWAYATGQR--------EDTSSH-------FNIFVGDLSPEVTDAAL 164
Query: 493 RKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
F+ F + + A+VM + GRS+GFGFV F
Sbjct: 165 FDSFSAFNSCSDARVMWDQKTGRSRGFGFVSF 196
Score = 50.8 bits (116), Expect = 7e-07
Identities = 56/214 (26%), Positives = 95/214 (44%), Gaps = 18/214 (8%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+ A+ +I +NG + G+ + V +RE + + F N++V + + +D L
Sbjct: 110 RRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAAL 164
Query: 181 KDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 357
D F + + +VM+ + G SRGFGFV+F + A+ A E+NGK V + +
Sbjct: 165 FDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK-WVSSRQIRCNW 223
Query: 358 AQKKA-----ERQKELKRKFE----------QLKSERL--TRYQGVNLYVKNLDDTIDDE 486
A K A + + K E +L +E Q +YV NL +
Sbjct: 224 ATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQL 283
Query: 487 RLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
L + F G +V ++ R KGFGFV +++
Sbjct: 284 DLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNT 315
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 58.0 bits (134), Expect = 4e-09
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC 303
FT++Y+ N S+EML MF +G++ V+ KD G SRGF F+ FE D+A RA
Sbjct: 16 FTSLYIANLDAQVSEEMLFLMFSDFGKVI-RSVLAKDFRGESRGFAFIEFESADSAGRAM 74
Query: 304 IELNGKELVEGKPLYVGRAQK 366
+ ++G+ L+ K L V R K
Sbjct: 75 LHMDGR-LIGQKILCVQRTPK 94
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
+LY+ NLD + +E L F+ FG + + V+ +D G S+GF F+ F S
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRS-VLAKDFRGESRGFAFIEFES 66
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 58.0 bits (134), Expect = 4e-09
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 342
SD L+D FEKYG + KV+ K G SRGFGF+ F++ A + A +NG +L +G+
Sbjct: 19 SDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDL-DGRT 77
Query: 343 LYVGRAQ 363
+ V +AQ
Sbjct: 78 ITVDKAQ 84
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 582
++ L T D LR F +G + AKV+L+ GRS+GFGF+ F
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITF 55
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 57.2 bits (132), Expect = 8e-09
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Frame = +1
Query: 157 EDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVE 333
E S E LK F KYG IT +M + G RGFGFV + D ++ +++
Sbjct: 52 ETTSAEFLKH-FGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDK---------VIQ 101
Query: 334 GKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPF 513
+ +G+ Q E+KR + S ++ ++V + ++DD+ ++ F F
Sbjct: 102 DNHIIIGK-------QVEIKRTIPR-GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQF 153
Query: 514 GTITSAKVMLED--GRSKGFGFVCFSS 588
G + ++M + GRS+GFGFV + S
Sbjct: 154 GELKEHQIMRDHSTGRSRGFGFVTYES 180
Score = 50.4 bits (115), Expect = 9e-07
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = +1
Query: 7 AANKSIEKV--NGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
A + ++KV + ++ GK V + R IPR + K+F V D+
Sbjct: 91 ADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIF----VGGIPSSVDDDEF 146
Query: 181 KDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 357
K+ F ++G + H++M G SRGFGFV +E D + + N EL G + + +
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIEL-SGTQVEIKK 205
Query: 358 AQKK 369
A+ K
Sbjct: 206 AEPK 209
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
FT V+V + E L+ FE+YG I V+ K+ G S+G+GFV F DP+AA RAC
Sbjct: 23 FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 304 IE 309
+
Sbjct: 83 AD 84
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 591
++V L E LR+ F +G I A V+ + GRSKG+GFV F P
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 75
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 56.4 bits (130), Expect = 1e-08
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 4/155 (2%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACIEL 312
VYV S+E+L ++F + G + + V N + +GF+ + + A+ A L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
N +L GKP+ R K ++ +K L G NL++ NLD +D++ L
Sbjct: 87 NMIKL-HGKPI---RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLL 128
Query: 493 RKEFAPFGTITSAKVMLED---GRSKGFGFVCFSS 588
F+ FG I S ++ D G S+GFGF+ + S
Sbjct: 129 YDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
Score = 56.4 bits (130), Expect = 1e-08
Identities = 40/125 (32%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+E A+ +I+ +N + L+GK + V + + +K L A LF + N D +++L
Sbjct: 76 EEDADYAIKVLNMIKLHGKPIRVNK---ASQDKKSLDVGANLF----IGNLDPDVDEKLL 128
Query: 181 KDMFEKYGRITSH-KVMYKDD-GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVG 354
D F +G I S+ K+M D GNSRGFGF++++ +A++ A + G+ L + + V
Sbjct: 129 YDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYL-SNRQITVS 187
Query: 355 RAQKK 369
A KK
Sbjct: 188 YAYKK 192
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 100 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFE 276
K+ L + ++V D ++ L+ F++YG+IT ++M +D G RGFGF+ F
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 277 DPDAAERACIELNGKELVEGKPLYVGRAQKK 369
D A+ A ++G+EL K + V +A+ K
Sbjct: 62 DRRGADDAIKHMHGREL-GNKVISVNKAEPK 91
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 100 KELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFE 276
K+ L + ++V D ++ L+ F++YG+IT ++M +D G RGFGF+ F
Sbjct: 2 KDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 277 DPDAAERACIELNGKELVEGKPLYVGRAQKK 369
D A+ A ++G+EL K + V +A+ K
Sbjct: 62 DRRGADDAIKHMHGREL-GNKVISVNKAEPK 91
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFT 61
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 56.4 bits (130), Expect = 1e-08
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 3/154 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V + + E + F K+G + +M + GN RGFGFV F D AE+ L
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKV---L 124
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
+++ + + + R + ++ ++K + K ++V L ++++ L
Sbjct: 125 EEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRK-----------IFVGGLPPLLEEDEL 173
Query: 493 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+ F +G I ++M + GRS+GFGFV F +
Sbjct: 174 KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT 207
Score = 52.4 bits (120), Expect = 2e-07
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = +1
Query: 43 LLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK 222
+++ + V + R +PR +++ ++ +K ++V ++ LK+ F YG I H+
Sbjct: 129 VIDDRKVDLKRTLPRGDKDTDIKAVSKT-RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQ 187
Query: 223 VMYKDD-GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKK 369
+MY G SRGFGFV F+ D+ +R + EL + K + + RA+ K
Sbjct: 188 IMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGD-KQVEIKRAEPK 236
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 56.4 bits (130), Expect = 1e-08
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VYV N ++ +L+++F G + S K++ K+ + +GFV + D +A A + L
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS---YGFVHYFDRRSAGLAILSL 111
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
NG+ L G+P+ V A +R E S N++V +L + D L
Sbjct: 112 NGRHLF-GQPIKVNWAYASGQR--------EDTSSH-------FNIFVGDLSPEVTDAML 155
Query: 493 RKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
F+ + T + A+VM + GRS+GFGFV F
Sbjct: 156 FTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 52.0 bits (119), Expect = 3e-07
Identities = 57/214 (26%), Positives = 93/214 (43%), Gaps = 18/214 (8%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+ +A +I +NG L G+ + V +RE + + F N++V + + +D ML
Sbjct: 101 RRSAGLAILSLNGRHLFGQPIKVNWAYASGQRE----DTSSHF-NIFVGDLSPEVTDAML 155
Query: 181 KDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 357
F Y + +VM+ + G SRGFGFV+F + A+ A E+ GK L + +
Sbjct: 156 FTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWL-GSRQIRCNW 214
Query: 358 AQKKA----ERQKELKRKFEQLKS-------------ERLTRYQGVNLYVKNLDDTIDDE 486
A K A ++Q + +L S Q +YV NL +
Sbjct: 215 ATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQV 274
Query: 487 RLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
L + F G +V ++ R KGFGFV +S+
Sbjct: 275 DLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYST 306
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 55.6 bits (128), Expect = 2e-08
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 16/167 (9%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 306
+V+V + D +D +L + F ++Y + S KV+ + G S+G+GFV F D + RA
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQL--------------KSERLTRYQGV 444
E+NG + + VG A K + + + + S+
Sbjct: 263 EMNG-AYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNA 321
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
++V +D + DE LR+ F+ FG + S K+ + KG GFV F+
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV----GKGCGFVQFA 364
Score = 40.3 bits (90), Expect = 0.001
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Frame = +1
Query: 178 LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEG-KPLYV 351
L F G ++S KV+ K S G+GFV F AAE +G + +P +
Sbjct: 124 LHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRI 183
Query: 352 GRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITS 528
A F + + ++++V +L + D L + F+ + ++ S
Sbjct: 184 NWAS------------FSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKS 231
Query: 529 AKVMLED--GRSKGFGFVCF 582
AKV+++ GRSKG+GFV F
Sbjct: 232 AKVVIDSNTGRSKGYGFVRF 251
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++V D DE L+ F ++G + S K+ +G GFV F D +AE A LN
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV-----GKGCGFVQFADRKSAEDAIESLN 377
Query: 316 G 318
G
Sbjct: 378 G 378
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 55.6 bits (128), Expect = 2e-08
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
FT V+V + E L+ F++YG I V+ K+ G S+G+GFV F DP+AA RAC
Sbjct: 23 FTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 304 IE 309
++
Sbjct: 83 VD 84
Score = 36.7 bits (81), Expect = 0.012
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 591
++V L E LR+ F +G I A V+ + GRSKG+GFV F P
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDP 75
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 342
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NGKEL +G+
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRV 76
Query: 343 LYVGRAQKK 369
+ V AQ +
Sbjct: 77 ITVNEAQSR 85
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCF 582
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 342
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NGKEL +G+
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRV 76
Query: 343 LYVGRAQKK 369
+ V AQ +
Sbjct: 77 ITVNEAQSR 85
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCF 582
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.8 bits (126), Expect = 4e-08
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 342
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NGKEL +G+
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL-DGRV 76
Query: 343 LYVGRAQKK 369
+ V AQ +
Sbjct: 77 ITVNEAQSR 85
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCF 582
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 54.8 bits (126), Expect = 4e-08
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 12/208 (5%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLL-NGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEM 177
+ AA ++++ +G+ + N + + + EK E + ++V + D SD +
Sbjct: 170 RSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLS-IFVGDLAPDVSDAV 228
Query: 178 LKDMFE-KYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 351
L + F +Y + KV+ + G S+G+GFV F D + RA E+NG + + V
Sbjct: 229 LLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNG-AFCSSRQMRV 287
Query: 352 GRAQKKAERQKELKRKFEQLK-------SERLTRYQGVN--LYVKNLDDTIDDERLRKEF 504
G A K + + L + ++ + N ++V LD + +E L + F
Sbjct: 288 GIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPF 347
Query: 505 APFGTITSAKVMLEDGRSKGFGFVCFSS 588
+ FG + S K+ + KG GFV F++
Sbjct: 348 SDFGEVVSVKIPV----GKGCGFVQFAN 371
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
+ ++V D ++E L F +G + S K+ +G GFV F + +AE A
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV-----GKGCGFVQFANRQSAEEAIGN 381
Query: 310 LNG 318
LNG
Sbjct: 382 LNG 384
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 54.4 bits (125), Expect = 5e-08
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +1
Query: 106 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 282
LG + T +++ D L+D F +G + KV+ ++ G SRGFGFV F D
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 283 DAAERACIELNGKELVEGKPLYVGRAQKK 369
AA A E++GKEL G+ + V A +
Sbjct: 87 GAATAAISEMDGKEL-NGRHIRVNPANDR 114
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 430 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 54.4 bits (125), Expect = 5e-08
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +1
Query: 106 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 282
LG + T +++ D L+D F +G + KV+ ++ G SRGFGFV F D
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 283 DAAERACIELNGKELVEGKPLYVGRAQKK 369
AA A E++GKEL G+ + V A +
Sbjct: 87 GAATAAISEMDGKEL-NGRHIRVNPANDR 114
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 430 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.0 bits (124), Expect = 7e-08
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Frame = +1
Query: 91 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFV 267
E EK+ + + +YV N + L +F + G + +++Y K SRGFGFV
Sbjct: 103 EEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
Query: 268 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 447
+ A+ A N + + G+ + V + + E+ R +++ + +
Sbjct: 163 TMGSIEEAKEAMQMFNSSQ-IGGRTVKVNFPEVPRGGENEVMRT--KIRDNNRSYVDSPH 219
Query: 448 -LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+Y NL + + L+ F + AKV+ E GRS+GFGF+ F S
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFES 269
Score = 54.0 bits (124), Expect = 7e-08
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
VY N G + + + LKD F + KV+Y ++ G SRGFGF++FE + + A +
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 313 NGKELVEGKPLYVGRAQKK 369
NG E VEG+ L + A ++
Sbjct: 281 NGVE-VEGRALRLNLASER 298
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +1
Query: 349 VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITS 528
V ++ E E + + E+ K + LYV NL TI L + F GT+
Sbjct: 85 VEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVD 144
Query: 529 AKVMLE--DGRSKGFGFVCFSS 588
+++ + RS+GFGFV S
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGS 166
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 54.0 bits (124), Expect = 7e-08
Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 7/158 (4%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++ N + +++ F++ G + ++ DDG+ +G+G + F P+ A++A +E+N
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKA-LEMN 444
Query: 316 GKELVEGKPLYVGRAQKK-AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
GK L+ G+ + + A ++ R RK E +S +YV+ ++ ++ +
Sbjct: 445 GK-LLLGRDVRLDLANERGTPRNSNPGRKGEGSQSR--------TIYVRGFSSSLGEDEI 495
Query: 493 RKE----FAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
+KE F+ G +T V E G S+GF ++ +S
Sbjct: 496 KKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEK-YGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
V+V + D +D ML + F+ Y + KV+ + G S+G+GFV F D RA E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER 489
+NG + +P+ G A K + + + ++V +D ++ ++
Sbjct: 235 MNG-QYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 490 LRKEFAPFGTITSAKV 537
L+ F FG + K+
Sbjct: 294 LKSVFGQFGELVHVKI 309
Score = 42.3 bits (95), Expect = 2e-04
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Frame = +1
Query: 169 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
+ L ++F G T+ KV+ K +G S G+GF+ F + AER NG + +
Sbjct: 93 ENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQA 152
Query: 346 Y-VGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEF-APFGT 519
+ + AQ A ++ Q + T ++V +L + D L + F A + +
Sbjct: 153 FRLNWAQLGAGERR-------QAEGPEHT------VFVGDLAPDVTDHMLTETFKAVYSS 199
Query: 520 ITSAKVMLE--DGRSKGFGFVCFS 585
+ AKV+ + GRSKG+GFV F+
Sbjct: 200 VKGAKVVNDRTTGRSKGYGFVRFA 223
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +1
Query: 109 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 288
GE T ++V + +++ LK +F ++G + K+ + GFV + +
Sbjct: 271 GESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA-----GKRCGFVQYANRAC 325
Query: 289 AERACIELNGKEL 327
AE+A LNG +L
Sbjct: 326 AEQALSVLNGTQL 338
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+YV N D L+++F + G++ +V+Y +D G S+GFGFV ++A L
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 313 NGKELVEGKPLYVGRAQKKAER 378
NG +L +G+ + V A+ + R
Sbjct: 311 NGADL-DGRQIRVSEAEARPPR 331
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V N + L +FE G + +V+Y K G SRGFGFV E A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKR 396
NG E EG+PL V +R++ R
Sbjct: 161 NGYEF-EGRPLRVNAGPPPPKREESFSR 187
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 299
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 418 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 53.6 bits (123), Expect = 1e-07
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
+YV N D L+++F + G++ +V+Y +D G S+GFGFV ++A L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 313 NGKELVEGKPLYVGRAQKKAER 378
NG +L +G+ + V A+ + R
Sbjct: 319 NGADL-DGRQIRVSEAEARPPR 339
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V N + L +FE G + +V+Y K G SRGFGFV E A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKR 396
NG E EG+PL V +R++ R
Sbjct: 161 NGYEF-EGRPLRVNAGPPPPKREESFSR 187
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS 307
Score = 35.9 bits (79), Expect = 0.020
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 418 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 106 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 282
LG + + ++V D LK F +G +T V+ ++ G SRGFGFV+F
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 283 DAAERACIELNGKELVEGKPLYVGRAQKKA 372
D+A A E++GKEL G+ + V A +++
Sbjct: 87 DSANNAIKEMDGKEL-NGRQIRVNLATERS 115
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 430 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 106 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 282
LG + + ++V D LK F +G +T V+ ++ G SRGFGFV+F
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 283 DAAERACIELNGKELVEGKPLYVGRAQKKA 372
D+A A E++GKEL G+ + V A +++
Sbjct: 87 DSANNAIKEMDGKEL-NGRQIRVNLATERS 115
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 430 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 53.6 bits (123), Expect = 1e-07
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VY N ++ +L+++F G I S K++ KD + +GFV + D A A + L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS---YGFVHYFDRRCASMAIMTL 120
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
NG+ + G+P+ V A +R E S N++V +L + D L
Sbjct: 121 NGRHIF-GQPMKVNWAYATGQR--------EDTSSH-------FNIFVGDLSPEVTDAAL 164
Query: 493 RKEFAPFGTITS----AKVMLED--GRSKGFGFVCF 582
F+ F + +S A+VM + GRS+GFGFV F
Sbjct: 165 FDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Score = 47.2 bits (107), Expect = 8e-06
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 22/218 (10%)
Frame = +1
Query: 1 KEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEML 180
+ A+ +I +NG + G+ + V +RE + + F N++V + + +D L
Sbjct: 110 RRCASMAIMTLNGRHIFGQPMKVNWAYATGQRE----DTSSHF-NIFVGDLSPEVTDAAL 164
Query: 181 KDMFEKYGRITSH----KVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
D F + +S+ +VM+ + G SRGFGFV+F + A+ A E+NGK V + +
Sbjct: 165 FDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK-WVSSRQI 223
Query: 346 YVGRAQKKA-----ERQKELKRKFE----------QLKSERL--TRYQGVNLYVKNLDDT 474
A K A + + K E +L +E Q +YV NL
Sbjct: 224 RCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPE 283
Query: 475 IDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
+ L + F G +V ++ R KGFGFV +++
Sbjct: 284 VTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNT 319
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 53.2 bits (122), Expect = 1e-07
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Frame = +1
Query: 184 DMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
+ F + G++ ++ M + SRG G+V F D + A I L+G+ L+ G+P+ V
Sbjct: 200 EFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA-IALSGQPLL-GQPVMV--- 254
Query: 361 QKKAERQKELKRKFEQLKSE--RLTRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITS 528
K +E +K L + L Y G LYV NL + ++ LRK F FG++
Sbjct: 255 -KPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVEL 313
Query: 529 AKVML-EDGRSKGFGFVCFS 585
+V E G KGFGFV F+
Sbjct: 314 VQVPRDETGLCKGFGFVQFA 333
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV N + S++ L+ +FE +G + +V + G +GFGFV F + A A + LN
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNA-LNLN 345
Query: 316 GKELVEGKPLYVGRAQKKAE 375
G+ + G+ + V + E
Sbjct: 346 GQLEIAGRAIKVSAVTDQTE 365
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
+ V++ D +E L+D+ E+ G I ++M +D G+S+G+ FVAF+ D A++A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 307 ELNGKELVEGKPLYVGRAQKK 369
EL+ KE +GK + ++ K
Sbjct: 176 ELHSKEF-KGKTIRCSLSETK 195
Score = 36.7 bits (81), Expect = 0.012
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS---RGFGFVAFED---PDAAER 297
+++ N ++++++ + + E G + + KD N+ RGF FV + + D + +
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 298 ACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI 477
I+ N K +EG V A K+ E Q+K+ LYVKN+ +
Sbjct: 258 KMIDSNFK--LEGNAPTVTWADPKSS--PEHSAAAAQVKA----------LYVKNIPENT 303
Query: 478 DDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
E+L++ F G +T G + FGFV ++
Sbjct: 304 STEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYA 339
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
N+++ N +F D+ L F+ +G++ S KV K G S+ FGF++++ AA+ A
Sbjct: 340 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 399
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRK 399
+NG +L GK L V + ++Q++ + K
Sbjct: 400 MNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 428
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDS 389
Score = 41.5 bits (93), Expect = 4e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 121 KLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
KLF + KN S+ ++ +F +YG I +++ S+G F+ +E + A A
Sbjct: 110 KLFVGMLPKNV----SETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAA 165
Query: 301 CIELNGKELVEGK--PLYVGRAQKKAERQ 381
LNG+ ++EG PL V A + ERQ
Sbjct: 166 MEALNGRHIMEGANVPLIVKWADTEKERQ 194
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
N+++ N +F D+ L F+ +G++ S KV K G S+ FGF++++ AA+ A
Sbjct: 331 NLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINT 390
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRK 399
+NG +L GK L V + ++Q++ + K
Sbjct: 391 MNGCQL-SGKKLKVQLKRDNGQQQQQQQSK 419
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDS 380
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +1
Query: 109 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 288
GE +L ++V ++ S+ ++ +F +YG I +++ S+G F+ +E +
Sbjct: 93 GELERLEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQ 152
Query: 289 AERACIELNGKELVEGK--PLYVGRAQKKAERQ 381
A A LNG+ ++EG PL V A + ERQ
Sbjct: 153 AVAAMEALNGRHIMEGANVPLIVKWADTEKERQ 185
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 52.0 bits (119), Expect = 3e-07
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFE-KYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
++V + D +D +L + F Y + KV+ + G ++G+GFV F D RA E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTID 480
+NG +P+ +G A K + +R Q + +T N ++V LD ++
Sbjct: 217 MNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 481 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
D+ L+ F+ +G I K+ K GFV FS
Sbjct: 274 DDHLKNVFSQYGEIVHVKI----PAGKRCGFVQFS 304
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
T V+V +D+ LK++F +YG I K+ + GFV F + AE A
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA-----GKRCGFVQFSEKSCAEEALRM 315
Query: 310 LNGKEL 327
LNG +L
Sbjct: 316 LNGVQL 321
Score = 36.3 bits (80), Expect = 0.015
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Frame = +1
Query: 169 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
+ L F G + S KV+ K G G+GF+ F AAER N + P
Sbjct: 75 ENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPI----PS 130
Query: 346 YVGRAQKKAERQKELKRKFEQLKS-ERLTRYQGVNLYVKNLDDTIDDERLRKEF-APFGT 519
+ + + + L S ++ ++V +L + D L + F A + +
Sbjct: 131 FPDQL---------FRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPS 181
Query: 520 ITSAKVMLE--DGRSKGFGFVCFS 585
+ AKV+++ GR+KG+GFV FS
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFS 205
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 52.0 bits (119), Expect = 3e-07
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFE-KYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
++V + D +D +L + F Y + KV+ + G ++G+GFV F D RA E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 310 LNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTID 480
+NG +P+ +G A K + +R Q + +T N ++V LD ++
Sbjct: 217 MNGVP-CSTRPMRIGPAASK--KGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 481 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
D+ L+ F+ +G I K+ K GFV FS
Sbjct: 274 DDHLKNVFSQYGEIVHVKI----PAGKRCGFVQFS 304
Score = 36.3 bits (80), Expect = 0.015
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Frame = +1
Query: 169 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
+ L F G + S KV+ K G G+GF+ F AAER N + P
Sbjct: 75 ENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPI----PS 130
Query: 346 YVGRAQKKAERQKELKRKFEQLKS-ERLTRYQGVNLYVKNLDDTIDDERLRKEF-APFGT 519
+ + + + L S ++ ++V +L + D L + F A + +
Sbjct: 131 FPDQL---------FRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPS 181
Query: 520 ITSAKVMLE--DGRSKGFGFVCFS 585
+ AKV+++ GR+KG+GFV FS
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFS 205
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +1
Query: 139 YVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELN 315
+V+ +D ++ L D+F K+G + K++Y +D G SR FGFV FE+ + A + ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 316 GKELVEGKPLYVGRAQKKAERQKELKRKFE 405
+E K + VG + RQ+ R E
Sbjct: 70 VEE-SRSKCVNVGSITVEVARQRRKNRSAE 98
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
FT V+V + L++ FE++G I V+ K G S+G+GFV F DP+AA++AC
Sbjct: 6 FTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
Query: 304 IE 309
++
Sbjct: 66 VD 67
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 490 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
LR F FG I A V+ + GRSKG+GFV F P
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDP 58
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
FT V+V + L++ FE++G I V+ K G S+G+GFV F DP+AA++AC
Sbjct: 6 FTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
Query: 304 IE 309
++
Sbjct: 66 VD 67
Score = 35.1 bits (77), Expect = 0.036
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 490 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
LR F FG I A V+ + GRSKG+GFV F P
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDP 58
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 51.2 bits (117), Expect = 5e-07
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Frame = +1
Query: 88 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFV 267
+E + E + + L ++V N S + ++F + G + + +++ + DG +RGF FV
Sbjct: 81 QEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFV 140
Query: 268 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL--TRYQG 441
+ A+ A I+ V G+ + V A++ +K + L S TR++
Sbjct: 141 TMASGEEAQ-AAIDKFDTFQVSGRIISVSFARR---FKKPTPKSPNDLPSPAPGDTRHK- 195
Query: 442 VNLYVKNLDDTIDDERLRKEF--APFGTITSAKVMLED--GRSKGFGFVCFSS 588
LYV NL LR+ F A F + SA+V+ D GRS G+GFV F++
Sbjct: 196 --LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFAT 245
Score = 48.4 bits (110), Expect = 4e-06
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Frame = +1
Query: 4 EAANKSIEKVNGMLLNGKMVYVG---RFI-PRKEREKELGEKAKLFTN--VYVKNFGEDF 165
E A +I+K + ++G+++ V RF P + +L A T +YV N
Sbjct: 146 EEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKA 205
Query: 166 SDEMLKDMFEK--YGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 339
L+++F + +++ V +G S G+GFV+F + AE A +LNGKE++ G+
Sbjct: 206 RSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIM-GR 264
Query: 340 PLYVGRAQKKAERQKE 387
P+ + + + A ++
Sbjct: 265 PITLKFSLRSASESED 280
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 50.8 bits (116), Expect = 7e-07
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 106 LGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDP 282
LG + T +Y+ + LKD F + +T +VM K G SRG+GFV F
Sbjct: 23 LGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISE 82
Query: 283 DAAERACIELNGKEL 327
D+A A +NG+EL
Sbjct: 83 DSANSAISAMNGQEL 97
Score = 44.4 bits (100), Expect = 6e-05
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +1
Query: 430 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
RY LY+ L D+ L+ F+ F +T A+VM GRS+G+GFV F S
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFIS 81
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 50.8 bits (116), Expect = 7e-07
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
T VYV N +D+ML++ F YG + VM + SRGFGFV + AE A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 307 ELNGKEL 327
++GKEL
Sbjct: 63 GMDGKEL 69
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+YV NL T D+ LR+ F+ +G + A VM + RS+GFGFV +SS
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 50.8 bits (116), Expect = 7e-07
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 11/176 (6%)
Frame = +1
Query: 94 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVA 270
R +E+ ++ + ++V G D E L + F++YG I K ++ K G S+G+GF+
Sbjct: 128 RIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Query: 271 FEDPDAAERACIELNGK--------ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 426
++ A A + K +L P++ G A + + SE
Sbjct: 188 YKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAA----AVSAPAQHSNSEHT 243
Query: 427 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+ +YV N+ +D ++L F+ FG I + L+ GR KGF + S
Sbjct: 244 QK----KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIE 309
+YV N G + + L F K+G I + + K G +GF ++ ++A+RA E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 50.8 bits (116), Expect = 7e-07
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 11/176 (6%)
Frame = +1
Query: 94 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVA 270
R +E+ ++ + ++V G D E L + F++YG I K ++ K G S+G+GF+
Sbjct: 128 RIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Query: 271 FEDPDAAERACIELNGK--------ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 426
++ A A + K +L P++ G A + + SE
Sbjct: 188 YKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAA----AVSAPAQHSNSEHT 243
Query: 427 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+ +YV N+ +D ++L F+ FG I + L+ GR KGF + S
Sbjct: 244 QK----KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIE 309
+YV N G + + L F K+G I + + K G +GF ++ ++A+RA E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 50.8 bits (116), Expect = 7e-07
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 11/176 (6%)
Frame = +1
Query: 94 REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVA 270
R +E+ ++ + ++V G D E L + F++YG I K ++ K G S+G+GF+
Sbjct: 128 RIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFIL 187
Query: 271 FEDPDAAERACIELNGK--------ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERL 426
++ A A + K +L P++ G A + + SE
Sbjct: 188 YKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAA----AVSAPAQHSNSEHT 243
Query: 427 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+ +YV N+ +D ++L F+ FG I + L+ GR KGF + S
Sbjct: 244 QK----KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKS 295
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIE 309
+YV N G + + L F K+G I + + K G +GF ++ ++A+RA E
Sbjct: 247 IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 50.8 bits (116), Expect = 7e-07
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 3/154 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
++V G D + L D F++YG I K V+ K G S+G+GF+ F+ A A +
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
K + + A + + + E + R +YV N+ ID ++L
Sbjct: 190 QKK--IGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQR----KIYVSNVSADIDPQKL 243
Query: 493 RKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+ F+ FG I + L+ GR KGF + S
Sbjct: 244 LEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRS 277
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 361 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 540
++ AER +++ + + E L + ++V L + L F +G I K +
Sbjct: 104 KEAAERHRDVANRIRIVADEDLVHRK---IFVHGLGWDTKADSLIDAFKQYGEIEDCKCV 160
Query: 541 LE--DGRSKGFGFVCFSS 588
++ G+SKG+GF+ F S
Sbjct: 161 VDKVSGQSKGYGFILFKS 178
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 50.4 bits (115), Expect = 9e-07
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +1
Query: 118 AKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAE 294
AK + ++V + +D L+ F ++G I ++M +D G SRGFGF+ F D A +
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 295 RACIELNGKELVEGKPLYVGRAQKKAER 378
+ E++G++ + + + V RA+ K R
Sbjct: 63 ESIREMHGRDFGD-RVISVNRAEPKLGR 89
Score = 44.0 bits (99), Expect = 8e-05
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFS 585
+G ++V L + D L + F+ FG I ++MLE GRS+GFGF+ F+
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFA 56
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERA 300
N++V+ FG D + E LK FE YG I VM KD G +G+GFV F+ A A
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREA 465
Score = 34.3 bits (75), Expect = 0.062
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
N++V+ E L+ F +G I V+++ GR KG+GFV F +
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERA 300
N++V+ G D + E LK FE YG IT VM KD G ++GFGFV F+ A A
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
N++V+ L E L+ F +G IT V+++ GR+KGFGFV F +
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 169 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
D L+ F +YG + K++ ++ G SRGFGFV F+D A + A +NG++L +G+ +
Sbjct: 21 DRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDL-DGRSI 79
Query: 346 YVGRAQKK 369
V AQ +
Sbjct: 80 TVNEAQSR 87
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCF 582
+V L DD L FA +G + +K++ E GRS+GFGFV F
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 169 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
D L+ F +YG + K++ ++ G SRGFGFV F+D A + A +NG++L +G+ +
Sbjct: 21 DRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDL-DGRSI 79
Query: 346 YVGRAQKK 369
V AQ +
Sbjct: 80 TVNEAQSR 87
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCF 582
+V L DD L FA +G + +K++ E GRS+GFGFV F
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTF 56
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 49.2 bits (112), Expect = 2e-06
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Frame = +1
Query: 160 DFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEG 336
D + LKD K+G + VM + G SRGFG+V F + A+ A L G+ +
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA---LKGEHFLGN 69
Query: 337 KPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFG 516
+ L V A K E ++ K ++TR ++V + ++ + R F +G
Sbjct: 70 RILEVKVATPKEEMRQPAK---------KVTR-----IFVARIPSSVSESDFRSHFERYG 115
Query: 517 TITSAKVMLEDGRSK---GFGFVCFSS 588
IT M +D SK G GF+ FSS
Sbjct: 116 EITDL-YMPKDYNSKQHRGIGFITFSS 141
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 97 EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS--RGFGFVA 270
++E+ + AK T ++V S+ + FE+YG IT M KD + RG GF+
Sbjct: 80 KEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITD-LYMPKDYNSKQHRGIGFIT 138
Query: 271 FEDPDAAE 294
F D+ E
Sbjct: 139 FSSADSVE 146
Score = 32.3 bits (70), Expect = 0.25
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS--RGFGFVAFEDPDAAER 297
++V ++ S + L+D F ++G I + KD S RGFGFV F + A+R
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIP-KDPKRSGHRGFGFVTFAENGVADR 296
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
+ +++ ++ L++ F KYG + +V+ ++ G SRGFGFV F +AA A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 307 ELNGKELVEGKPLYVGRAQKK 369
L+G++L G+ + V A +
Sbjct: 100 ALDGRDL-HGRVVKVNYANDR 119
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
L++ + ++D++ LR+ F +G + +V+L E GRS+GFGFV F+S
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTS 90
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 48.8 bits (111), Expect = 3e-06
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Frame = +1
Query: 184 DMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA 360
+ F K G++ + +M ++ S+G G++ F D + A I L+G +L G+P+ V
Sbjct: 186 EFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA-IALSG-QLFLGQPVMV--- 240
Query: 361 QKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM 540
K +E +K L + T LYV NL + + +LR+ F FG + ++
Sbjct: 241 -KPSEAEKNLAQSNSTTVGG--TGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLP 297
Query: 541 L--EDGRSKGFGFVCF 582
L E G+ KGFGF+ F
Sbjct: 298 LDPETGQCKGFGFIQF 313
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+YV N + S+ L+ +FE +G + ++ + + G +GFGF+ F + ++ A I L
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 313 NGKELVEGKPLYV 351
NGK + G+ + V
Sbjct: 327 NGKLEIAGRTIKV 339
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V ++E L+D F +G++ +V+ +D G S+GFGFV + + AE+A E+
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 313 NGKELVEGKPLYVGRAQKKAERQ 381
N K ++G ++V A+ + R+
Sbjct: 96 NAK-FLDGWVIFVDPARPREPRR 117
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
L+V L +E+L+ FA FG + A+V+ + GRSKGFGFV +++
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYAT 84
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 48.8 bits (111), Expect = 3e-06
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Frame = +1
Query: 208 ITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 384
I S KV+ K++G S G+GFV FE D A++ E NG + + + +K
Sbjct: 129 IVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEK 188
Query: 385 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGR 555
L+ L +++V +L + D L + F+ + ++ +AKV+L+ GR
Sbjct: 189 RLENNGPDL-----------SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGR 237
Query: 556 SKGFGFVCF 582
SKG+GFV F
Sbjct: 238 SKGYGFVRF 246
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMF-EKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACI 306
+++V + D SD +L + F EKY + + KV+ + G S+G+GFV F D + +A
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 307 ELNG 318
E+NG
Sbjct: 258 EMNG 261
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 48.4 bits (110), Expect = 4e-06
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACI 306
T + +N + E ++ +FEKYG + ++ M+K + N RG F+ P+ A A
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERN-RGLVFIEMASPEEAATALK 152
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 486
L E EG+ L V A + K+K E + NL+V NL +
Sbjct: 153 SLESCE-YEGRRLKVDYA--------KTKKKKTYAPRETPSPVPTFNLFVANLAFEARAK 203
Query: 487 RLRKEF-APFGTITSAKVMLEDG--RSKGFGFVCFSS 588
L++ F A G + S +V+ + RS G+GFV F +
Sbjct: 204 HLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/100 (28%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEK-YGRITSHKVMYKDDGN-SRGFGFVAFEDPDAAERACI 306
N++V N + + LK+ F+ G + S +V++ ++ S G+GFV+F+ AE A I
Sbjct: 190 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI 249
Query: 307 ELNGKELVEGKPLYVGRAQK--KAERQKELKRKFEQLKSE 420
E GK+ + G+P+ + ++++ K + ++ L+ E+ + E
Sbjct: 250 EFQGKDFL-GRPIRLAKSKQFVKLQAKEGLQPPEEEAEEE 288
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
+ +++ ++ LKD F +G + ++ Y K G SRGFGFV F + A A
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 423
++GK L+ G+PL + A ++ + + + K ER
Sbjct: 101 AMDGKGLL-GRPLRISFALERVRGGPVVVPRLGKSKRER 138
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFS 585
L++ L ++D++ L+ F+ FG + ++ + GRS+GFGFV F+
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFA 90
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++DP + AC L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 313 NGKELVEGKPLYVGRA-----QKKAERQKELKRKFEQLKSERL 426
NG ++ + K L V RA Q K E+++ L +Q+ +RL
Sbjct: 437 NGIKMGD-KTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRL 478
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 342
+++ L + F K G++ + VM + S+GFGFV F D A++A +E NG++L G+
Sbjct: 46 TEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL-NGRT 104
Query: 343 LYVGRAQKK 369
++V A+ K
Sbjct: 105 IFVDYAKAK 113
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +1
Query: 427 TRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
T+ +GV L++ L ++ L + F+ G + A+++++ RSKGFGFV F+S
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 47.6 bits (108), Expect = 6e-06
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIE 309
N+++ N +F D+ L F+ +G + S KV K G S+ FGFV+++ AA+ A
Sbjct: 350 NLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDM 409
Query: 310 LNGKELVEGKPLYV 351
+NG+ L GK L V
Sbjct: 410 MNGRHL-GGKKLKV 422
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +1
Query: 109 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 288
GE +L ++V ++ S+ ++ +F KYG I +++ S+G F+ +E +
Sbjct: 99 GELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQ 158
Query: 289 AERACIELNGKELVEGK--PLYVGRAQKKAERQKELKRK 399
A A +NGK +EG PL V A + ER +K
Sbjct: 159 AVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
+G NL++ N+ D+ L F FG + SAKV ++ G SK FGFV + S
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDS 399
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 47.6 bits (108), Expect = 6e-06
Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++ N + +++ F++ G + + +DDG+ RGFG V F + A++A +E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA-LEF 357
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG---VNLYVKNLDDTIDD 483
+G+ L+ G+ + + AQ++ ER + + F + G ++VK D ++ +
Sbjct: 358 HGRPLL-GREIRLDIAQERGERGE--RPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSE 414
Query: 484 E----RLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 585
+ LR+ F+ G I + V + + G SKG ++ FS
Sbjct: 415 DDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS 454
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
+T V+V + E +K FE++G I V+ K G S+G+GFV F + +AA AC
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 304 IELNGKELVEGKPLYVGRAQKKAERQK 384
++ +++G+ A +R K
Sbjct: 72 VD--ATPVIDGRRANCNLASLGLQRSK 96
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 484 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 582
E ++K F FG I A V+ + GRSKG+GFV F
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
+T V+V + E +K FE++G I V+ K G S+G+GFV F + +AA AC
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 304 IELNGKELVEGKPLYVGRAQKKAERQK 384
++ +++G+ A +R K
Sbjct: 72 VD--ATPVIDGRRANCNLASLGLQRSK 96
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 484 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 582
E ++K F FG I A V+ + GRSKG+GFV F
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
+T V+V + E +K FE++G I V+ K G S+G+GFV F + +AA AC
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 304 IELNGKELVEGKPLYVGRAQKKAERQK 384
++ +++G+ A +R K
Sbjct: 72 VD--ATPVIDGRRANCNLASLGLQRSK 96
Score = 34.7 bits (76), Expect = 0.047
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +1
Query: 484 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 582
E ++K F FG I A V+ + GRSKG+GFV F
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF 61
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 46.8 bits (106), Expect = 1e-05
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFE-KYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAAERACI 306
+++V + D +D +L++ F Y + KV+ G S+G+GFV F + RA
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 307 ELNG---------------KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQG 441
E+NG K+ V + YV +A + + + +
Sbjct: 177 EMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTC 236
Query: 442 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
+ V NLD + +E L+K F+ G + K+ +KG+G+V F +
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKI----PATKGYGYVQFKT 281
Score = 37.1 bits (82), Expect = 0.009
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Frame = +1
Query: 169 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPL 345
+ L F + G + S KV+ K G G+GF+ F AAER NG ++ G L
Sbjct: 37 ENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQM-PGTEL 95
Query: 346 YVGRAQKKAERQKELKRKFEQLKS-ERLTRYQGVNLYVKNLDDTIDDERLRKEF-APFGT 519
+ + S +++ +++V +L + D L++ F + +
Sbjct: 96 -------------TFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 520 ITSAKVMLE--DGRSKGFGFVCFS 585
+ AKV+ + GRSKG+GFV F+
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFA 166
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
T + V N ++ ++E LK F + G +V+Y ++G+G+V F+ +AE A
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLG-----EVIYVKIPATKGYGYVQFKTRPSAEEAVQR 291
Query: 310 LNGK 321
+ G+
Sbjct: 292 MQGQ 295
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +1
Query: 91 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFV 267
+ +E ++++VK F + S+ LK +F ++G++T+ K++ + S G+G+V
Sbjct: 64 DETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 123
Query: 268 AFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQK 384
F + A+ A +NGK +G+ + V Q R++
Sbjct: 124 WFNSKEDAQSAVEAMNGK-FFDGRFILVKFGQPGLSRRR 161
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 46.0 bits (104), Expect = 2e-05
Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++D + AC L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 313 NGKELVEGKPLYVGRAQ-----KKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDT 474
NG ++ + K L V RA +K E++ L +Q+ +R+ G V V L
Sbjct: 421 NGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQV 479
Query: 475 IDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFV-CF 582
+ ++ LR + +G I +ED R +G F C+
Sbjct: 480 VTEDELRDD-EEYGDI------MEDMRQEGGKFAFCY 509
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
T ++V + + ++ FE++G I V+ K+ G S+G+GFV F++ +AA RAC
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 307 ELN 315
+N
Sbjct: 82 NMN 84
Score = 33.1 bits (72), Expect = 0.14
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
++V L + +R+ F FG I A V+ + GRSKG+GFV F
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF 70
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 91 EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFV 267
+ +E ++++VK F + S+ LK +F ++G++T+ K++ + S G+G+V
Sbjct: 45 DETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 104
Query: 268 AFEDPDAAERACIELNGK 321
F + A+ A +NGK
Sbjct: 105 WFNSKEDAQSAVEAMNGK 122
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 45.6 bits (103), Expect = 3e-05
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++D + AC L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 313 NGKELVEGKPLYVGRAQ-----KKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDT 474
NG ++ + K L V RA +K E++ L +Q+ +R+ G V V L
Sbjct: 421 NGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQV 479
Query: 475 IDDERLRKEFAPFGTITSAKVMLEDGRSKGFGF 573
+ ++ LR + +G I +ED R +G F
Sbjct: 480 VTEDELRDD-EEYGDI------MEDMRQEGGKF 505
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 45.6 bits (103), Expect = 3e-05
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++V F++ ++++ E +G + ++ ++ GNS+G+ F ++D + AC L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 313 NGKELVEGKPLYVGRAQ-----KKAERQKELKRKFEQLKSERLTRYQG-VNLYVKNLDDT 474
NG ++ + K L V RA +K E++ L +Q+ +R+ G V V L
Sbjct: 421 NGIKMGD-KTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQV 479
Query: 475 IDDERLRKEFAPFGTITSAKVMLEDGRSKGFGF 573
+ ++ LR + +G I +ED R +G F
Sbjct: 480 VTEDELRDD-EEYGDI------MEDMRQEGGKF 505
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Frame = +1
Query: 109 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDA 288
GE +L ++V ++ S+ ++ +F KYG I +++ S+G F+ +E +
Sbjct: 99 GELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQ 158
Query: 289 AERACIELNGKELVEGK--PLYVGRAQKKAERQKELKRK 399
A A +NGK +EG PL V A + ER +K
Sbjct: 159 AVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 582
+G NL++ N+ D+ L F FG + SAKV ++ G SK FG + F
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 45.2 bits (102), Expect = 3e-05
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGR-ITSHKVMYKDDGNSRGFGFVAFEDPDAAERACI 306
T +YV +++ L+D FE++G I + VM K +GF F+ +E + A +A
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRK 399
++GK ++G+ ++V A+ +++ + R+
Sbjct: 137 GMHGK-FLDGRVIFVEEAKTRSDMSRAKPRR 166
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
LYV L ++ LR F FG + ++++ R KGF F+ + +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 44.8 bits (101), Expect = 4e-05
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Frame = +1
Query: 115 KAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAA 291
K K VYV D ++ L +F +YG I + + K G S+GF F+A+ED +
Sbjct: 31 KYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRST 90
Query: 292 ERACIELNGKELVEGKPLYVGR--AQKKAERQKELKRK 399
A LNG LV G+ + V A KK E + E R+
Sbjct: 91 ILAVDNLNG-ALVLGRTIKVDHCGAYKKHEEEDEETRR 127
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +1
Query: 121 KLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS-RGFGFVAFEDPDAAER 297
++ ++V +D+ L+ +F +G+I +++ + +GFGF+ F+ D A +
Sbjct: 4 RISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARK 63
Query: 298 ACIELNGKELVEGKPLYVGRAQKKAE 375
A L+GK +V+G+ ++V A+ E
Sbjct: 64 ALKSLDGK-IVDGRLIFVEVAKNAEE 88
Score = 40.7 bits (91), Expect = 7e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
L+V L D+ LR+ F+PFG I A+++ E R KGFGF+ F S
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDS 57
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
+V V N ED L ++F +G +T H + + SRGFGFV+F + A+RA +
Sbjct: 175 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
Query: 310 LNG 318
LNG
Sbjct: 235 LNG 237
Score = 35.5 bits (78), Expect = 0.027
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 415 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
S+ +R+ ++ V NL + L + F PFG +T V ++ S+GFGFV F S
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNG 318
+DE L+ F ++G + K++ ++ G SRGFGFV F+D A A E+NG
Sbjct: 18 NDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCF 582
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 44.4 bits (100), Expect = 6e-05
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = +1
Query: 109 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDP 282
G L T++ V+N D E L+ FE++G + + +D G+ RGFGFV F DP
Sbjct: 29 GRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDI-YLPRDYYTGDPRGFGFVQFMDP 87
Query: 283 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 399
A A ++G L+ G+ L V A++ ++ E++ +
Sbjct: 88 ADAADAKHHMDG-YLLLGRELTVVFAEENRKKPTEMRAR 125
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
+L V+NL E LRK F FG + + + G +GFGFV F P
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDP 87
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 44.0 bits (99), Expect = 8e-05
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDPDAAERAC 303
T++ V+N D E L+ FE++G + + +D G+ RGFGF+ F DP A A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDI-YLPRDYYTGDPRGFGFIQFMDPADAAEAK 95
Query: 304 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 423
+++G L+ G+ L V A++ ++ E++ + +S R
Sbjct: 96 HQMDG-YLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNR 134
Score = 30.7 bits (66), Expect = 0.77
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 591
+L V+NL E LR+ F FG + + + G +GFGF+ F P
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDP 88
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.0 bits (99), Expect = 8e-05
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
+V V N ED + L ++F +G +T + + + G SRGFGFV F + A+RA +
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 310 LNG 318
LNG
Sbjct: 274 LNG 276
Score = 34.3 bits (75), Expect = 0.062
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 454 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
V NL + + L + F PFG +T V ++ G S+GFGFV F S
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVS 263
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 43.6 bits (98), Expect = 1e-04
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Frame = +1
Query: 142 VKNFGEDFSDEMLKDMFEKY---GRITSHKVM-YKDDGN--SRGFGFVAFEDPDAAERAC 303
VKN +DE LK F K G+I S ++ +K + S G+GFV F+ + A
Sbjct: 573 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 632
Query: 304 IELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDD 483
+L G L +G L + + E ++ K + K + T+ L+VKN+
Sbjct: 633 RDLQGTVL-DGHALIL----RFCENKRSDKVGKDSNKDKPCTK-----LHVKNIAFEATK 682
Query: 484 ERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCF 582
LR+ F+PFG I S ++ ++ G+ G+ FV F
Sbjct: 683 RELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEF 716
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 226 MYKDDGNSRGFGFVAFEDPDAAERACIELNGKEL 327
M +DG SR FGF+ F A++A N L
Sbjct: 1 MRSNDGKSRQFGFIGFRSAQEAQQAIKYFNNTYL 34
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Frame = +1
Query: 73 RFIPRKE-----REKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-K 234
R IPRK + L E + ++ + G + +D++L F ++ KV+ K
Sbjct: 113 RAIPRKAAGQSWEDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDK 172
Query: 235 DDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA-------QKKAERQKELK 393
G ++G+GFV+F +P A E+NGK V +P+ + ++ Q+ AERQK
Sbjct: 173 RTGKTKGYGFVSFLNPADLAAALKEMNGK-YVGNRPIKLRKSSWKERTDQEAAERQKHHS 231
Query: 394 RK 399
K
Sbjct: 232 NK 233
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 591
L+ +L + ++D+ L K FA F T AKV+ + G++KG+GFV F +P
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNP 188
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
FT +YV E L + F+++G I V+ ++ S+G+GFV F+D ++A RAC
Sbjct: 12 FTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC 71
Query: 304 IELNGKELVEGK 339
+ N +EG+
Sbjct: 72 KDPN--PTIEGR 81
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 42.7 bits (96), Expect = 2e-04
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Frame = +1
Query: 49 NGKMVYVGRFIPRK---EREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSH 219
N + Y R PR +R + +G K T V +D+ L+ +F + R+
Sbjct: 43 NKRTKYKMRIRPRSSISKRRRLIG--GKTLTCVSNSGLSAYTTDQSLRQLFAPFARLIKD 100
Query: 220 KVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 393
+ + +GFGF+ FE D A++A LNGK +V G+ ++V A++ LK
Sbjct: 101 QQTQRP----KGFGFITFESEDDAQKALKALNGK-IVNGRLIFVETAKEVEAPTTSLK 153
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 481 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
D+ LR+ FAPF + + + R KGFGF+ F S
Sbjct: 84 DQSLRQLFAPFARLIKDQ---QTQRPKGFGFITFES 116
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 370 AERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE- 546
A R L + E R NL+V L E LR FA FG + AKV+ +
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 547 -DGRSKGFGFVCFSS 588
G SKGFGFV +++
Sbjct: 92 VSGYSKGFGFVRYAT 106
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/101 (23%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +1
Query: 82 PRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGF 258
P+ E + +A+ TN++V + + E L+ F ++G + KV+ + G S+GF
Sbjct: 40 PQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGF 99
Query: 259 GFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQ 381
GFV + + + + ++GK ++G ++ A+ + + Q
Sbjct: 100 GFVRYATLEDSAKGIAGMDGK-FLDGWVIFAEYARPREQSQ 139
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +1
Query: 166 SDEM-LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGK 339
+DE L++ F KYG + K++ ++ G SRGF FV F + A A ++L+G++L G+
Sbjct: 45 TDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA-MQLDGQDL-HGR 102
Query: 340 PLYVGRAQKK 369
+ V A ++
Sbjct: 103 RIRVNYATER 112
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
++V + + D+ LR+ F+ +G + AK+++ E GRS+GF FV F+S
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTS 84
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 82 PRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRG 255
P K KE E TN+Y+ D+ L ++F +G I KV+ KD G S+G
Sbjct: 469 PTKPPSKEYDE-----TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI-KDRVTGLSKG 522
Query: 256 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 366
+GFV + D A A +NG EG+ L V A K
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRF-EGRTLAVRIAGK 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 433 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFS 585
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 42.3 bits (95), Expect = 2e-04
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +1
Query: 82 PRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRG 255
P K KE E TN+Y+ D+ L ++F +G I KV+ KD G S+G
Sbjct: 469 PTKPPSKEYDE-----TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVI-KDRVTGLSKG 522
Query: 256 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQK 366
+GFV + D A A +NG EG+ L V A K
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRF-EGRTLAVRIAGK 558
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 433 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFS 585
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYA 529
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
T V+V D E + D F KYG I ++ K S+G+GFV F+D AA RAC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACI 306
+ ++VK ++E L F +YG++ V M K +GF +V F + AE+A +
Sbjct: 21 STLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL 80
Query: 307 ELNGKELVEGK 339
ELN +LV+G+
Sbjct: 81 ELNA-QLVDGR 90
Score = 32.3 bits (70), Expect = 0.25
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
L+VK + + +E L + F+ +G + V+++ R KGF +V FSS
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSS 71
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
+T V+V + + ++ FE++G I ++ K+ G S+G+GFV F + D+A RA
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 304 IELN 315
+ N
Sbjct: 76 ADPN 79
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 469 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
+T DE +R+ F FG I A ++ + G+SKG+GFV F
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERAC 303
+T V+V + + ++ FE++G I ++ K+ G S+G+GFV F + D+A RA
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 304 IELN 315
+ N
Sbjct: 76 ADPN 79
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 469 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
+T DE +R+ F FG I A ++ + G+SKG+GFV F
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
+ ++V E+LK+ F +G+I V+ ++ G SRGFGFV ++ + A A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 307 ELNGKEL 327
+ KEL
Sbjct: 96 AMQNKEL 102
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSS 588
++V L + D E L++ F FG I A V+L E G S+GFGFV + S
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDS 86
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 42.3 bits (95), Expect = 2e-04
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = +1
Query: 67 VGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDG 243
V R + R + ++YV ++ L+D F K G++T H V+
Sbjct: 54 VSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTR 113
Query: 244 NSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 378
SRGFGF++ + A R CI +++G+ + V +A+++ R
Sbjct: 114 ESRGFGFISMKSVGDANR-CIRSLDHSVLQGRVITVEKARRRRGR 157
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 41.5 bits (93), Expect = 4e-04
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 15/166 (9%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++V N + + D F+K G + +++ G G GFV F + AE A + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 316 GKELVEGKPLYVGRAQKKAE--------RQKELKRKFEQLKS------ERLTRYQGVNLY 453
G E ++ +++ A KKA K + + +L+S ER L+
Sbjct: 189 G-ECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVLF 247
Query: 454 VKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSS 588
V NL + F G + S ++M+ +G+ G+GFV F+S
Sbjct: 248 VANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFAS 293
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++V N + D F G + S ++M +G G+GFV F D ++A N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 316 GKELVEGK 339
G+ L + K
Sbjct: 306 GEYLHDHK 313
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/64 (21%), Positives = 28/64 (43%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++V N + F+ + +++ G G GFV F + A++A ++N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 316 GKEL 327
G+ L
Sbjct: 551 GENL 554
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
T +Y+ F + ++ F ++G + +V K G S+ FGF+ FEDP+ AE A
Sbjct: 60 TVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
Query: 307 ELNGKELVE 333
+N L+E
Sbjct: 120 AMNDYLLME 128
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSP 591
LY+ + + + F+ FGT+ +V + G+SK FGF+ F P
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDP 111
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 41.1 bits (92), Expect = 5e-04
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VYV NF D L+ +F K+GR+ +V K G+ FV FED AE A
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRV--KRVDMKS-----GYAFVYFEDERDAEDAIRRT 55
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER- 489
+ G+ K + ++ R + + ++R T+ L+V N D ER
Sbjct: 56 DNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSNQRPTK----TLFVINFDPIRTRERD 111
Query: 490 LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
+ + F P+G + + ++ + F FV F++
Sbjct: 112 MERHFEPYGKVLNVRM------RRNFAFVQFAT 138
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 169 DEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKEL 327
++ ++ F ++G + K++ ++ G S+GF FV F+D D+ A +NG+EL
Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQEL 110
Score = 33.9 bits (74), Expect = 0.082
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 451 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCF 582
+V L D++ + + F FG + +K+++ E GRSKGF FV F
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTF 92
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 VYVKNF-GEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+ VKN + ++E L+D+F + G I K+ K DG SR F ++ F A+ A +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 313 N 315
N
Sbjct: 64 N 64
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 342
S++ L+ FE +G + K+ M K S+G+ F+ + +AA A E+NGK ++ G
Sbjct: 294 SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGK-IINGWM 352
Query: 343 LYVGRAQKKAERQKELKRKF 402
+ V A+ K RQ + F
Sbjct: 353 IVVDVAKTKPFRQNRSQPSF 372
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACI 306
T V+V + + ++ F+++G I ++ K G S+G+GFV F D D+A RA
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 307 ELN 315
+ N
Sbjct: 77 DPN 79
Score = 31.1 bits (67), Expect = 0.58
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 469 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
+T DE +R+ F FG I A ++ + G+SKG+GFV F
Sbjct: 27 ETPTDE-MRRYFDQFGEILEAVIITDKATGKSKGYGFVTF 65
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 397 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFG 570
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++ RSKG+
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
Query: 571 FVCFSS 588
F+ F+S
Sbjct: 85 FIQFTS 90
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKV-MYKDDGNSRGFGFVAFEDPDAAERA 300
T++YV++ + + +ML+ F+++G IT+ + + G +GFV FE+ DAA RA
Sbjct: 319 TSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRA 376
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCF 582
+G ++YV++L + + L EF FG IT+ + + + R G +GFV F
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEF 367
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 39.1 bits (87), Expect = 0.002
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
V+V NF + L+ +F+KYGR+ +V K G+ FV FED AE A +L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV--DRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 316 GKEL-VEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDER- 489
E + L V A+ + R + + LK + L+V N D E
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTK-------TLFVINFDPIRTKEHD 109
Query: 490 LRKEFAPFGTITSAKV 537
+ K F P+G +T+ ++
Sbjct: 110 IEKHFEPYGKVTNVRI 125
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.1 bits (87), Expect = 0.002
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 1/150 (0%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++++ D + E L+ +F YG + V+ K G S+G+GFV F D A A E
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
+ K ++G+ V Q A + + + + +YV N+ + +RL
Sbjct: 137 SKK--IDGR---VTVTQLAASGNQGTGSQIADISMRK--------IYVANVPFDMPADRL 183
Query: 493 RKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
F +G + + + K GF F
Sbjct: 184 LNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 39.1 bits (87), Expect = 0.002
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 1/150 (0%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIEL 312
++++ D + E L+ +F YG + V+ K G S+G+GFV F D A A E
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEP 136
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL 492
+ K ++G+ V Q A + + + + +YV N+ + +RL
Sbjct: 137 SKK--IDGR---VTVTQLAASGNQGTGSQIADISMRK--------IYVANVPFDMPADRL 183
Query: 493 RKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
F +G + + + K GF F
Sbjct: 184 LNHFMAYGDVEEGPLGFDKVTGKSRGFALF 213
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC 303
T +YV E L FE++G I KV+ S+GFGFV F + ++A RAC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCF 582
+YV L E L F FG I AKV+ + RSKGFGFV F
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF 57
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 38.7 bits (86), Expect = 0.003
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV+N + + E + D+F KYG I ++ D ++G FV +ED A+ A L+
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAI--RQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLS 78
Query: 316 GKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSE-RLTRYQ 438
G V + L V Q ++ +KF+Q KSE +T+ Q
Sbjct: 79 GFN-VANRYLIVLYYQ-----HAKMSKKFDQKKSEDEITKLQ 114
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
LYV+NL I E + F +G I ++ D +KG FV +
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGC-DKATKGTAFVVY 64
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VYV D ++E ++ +F YG + + K++ + +GFV F + +A+ A ++
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 313 NGKEL 327
+GK +
Sbjct: 68 DGKSI 72
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +1
Query: 109 GEKAKLFT---NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFED 279
GE+ ++ T ++V + + +++ ++++F ++G + +M + SRG GFV +
Sbjct: 201 GERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSS 260
Query: 280 PDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 387
+ A A LNG + G +PL V A+ K + E
Sbjct: 261 KETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +1
Query: 109 GEKAKLFT---NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFED 279
GE+ ++ T ++V + + +++ ++++F ++G + +M + SRG GFV +
Sbjct: 201 GERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSS 260
Query: 280 PDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 387
+ A A LNG + G +PL V A+ K + E
Sbjct: 261 KETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 37.9 bits (84), Expect = 0.005
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRI--TSHKVMYKDD------------GNSRGFGFVAF 273
+Y+ N D + + LKD+F G++ K YKD GN +G +A+
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 274 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 378
EDP AA A N E+ G + V A+K A R
Sbjct: 342 EDPSAAHSAGGFFNNYEM-RGNKISVTMAEKSAPR 375
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 37.9 bits (84), Expect = 0.005
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRI--TSHKVMYKDD------------GNSRGFGFVAF 273
+Y+ N D + + LKD+F G++ K YKD GN +G +A+
Sbjct: 282 IYISNLPPDVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNYKGDACLAY 341
Query: 274 EDPDAAERACIELNGKELVEGKPLYVGRAQKKAER 378
EDP AA A N E+ G + V A+K A R
Sbjct: 342 EDPSAAHSAGGFFNNYEM-RGNKISVTMAEKSAPR 375
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCF 582
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY----KDDGNSRGFGFVAFEDPDAAER 297
TN+YV N + L F ++G I S K+M+ ++ R GFV+F + +
Sbjct: 179 TNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQA 238
Query: 298 ACIELNG 318
A E+ G
Sbjct: 239 AKDEMQG 245
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCF 582
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAF 238
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY----KDDGNSRGFGFVAFEDPDAAER 297
TN+YV N + L F ++G I S K+M+ ++ R GFVAF + E
Sbjct: 187 TNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADGEA 246
Query: 298 ACIELNG 318
A ++ G
Sbjct: 247 AKEKMQG 253
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERACI 306
T ++V N + + L+ FE++G++ V+ + G S+G+GF+ F D + RA
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL- 70
Query: 307 ELNGKELVEGK 339
N K +++G+
Sbjct: 71 -QNSKPIIDGR 80
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCF 582
++V NL + LR+ F FG + A V+ E GRSKG+GF+ F
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 37.9 bits (84), Expect = 0.005
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 4/171 (2%)
Frame = +1
Query: 85 RKEREKELGEKAK-LFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRG 255
RK R + + A +YV + ++ ++ +FEKYG +T ++ KD G
Sbjct: 94 RKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVT-EIILPKDKMTGERAA 152
Query: 256 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 435
+ F+ ++ + A L + G+ L V +AER E++ +
Sbjct: 153 YCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAER--------ERIGFAPVQLP 204
Query: 436 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFS 585
LYV+ L+ + + F+ +G I + L+D + +G+ FV FS
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFS 255
Score = 36.7 bits (81), Expect = 0.012
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Frame = +1
Query: 16 KSIEKVNGML--LNGKMVYVGRFIPRK------EREKELGEKAKLFTN--VYVKNFGEDF 165
K +E+ N + L + + G +P K ERE+ +L N +YV+ +
Sbjct: 159 KKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQT 218
Query: 166 SDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEG--K 339
+ + ++F +YG I + D RG+ FV F + A A LNG + G +
Sbjct: 219 TKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQ 278
Query: 340 PLYVGRAQKKAERQKELKRKF 402
PL V A K R E + F
Sbjct: 279 PLIVRFADPKKPRLGEQRSTF 299
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 312
+++ +++E ++D+ + YG++ ++ + FGFV F+ +AA +
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFI 452
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 435
N EL EG+ RA+ QK K + + +S++ +R+
Sbjct: 453 NNSELGEGEDKAKVRARLSRPLQKAGKGR-QSSRSDQRSRH 492
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 37.9 bits (84), Expect = 0.005
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 1/138 (0%)
Frame = +1
Query: 178 LKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGR 357
+K F ++ S +++ +G G+GFV F A +A E NG+ L K L +
Sbjct: 174 IKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKG 233
Query: 358 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 537
+ ++ K L+V NL D+I + F G + ++
Sbjct: 234 HESPGFAEEAAITK---------------TLFVANLRDSIQISDIINFFKDVGEVVHVRL 278
Query: 538 ML-EDGRSKGFGFVCFSS 588
++ G+ G+GFV F+S
Sbjct: 279 IVNSQGKHAGWGFVEFAS 296
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 37.9 bits (84), Expect = 0.005
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 67 VGRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDG 243
V R + R + ++YV ++ L+D F K G++T H V+
Sbjct: 24 VSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTR 83
Query: 244 NSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYV 351
SRGFGF++ + A R CI +++G+ + V
Sbjct: 84 ESRGFGFISMKSVGDANR-CIRSLDHSVLQGRVITV 118
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 37.5 bits (83), Expect = 0.007
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHK-VMYKDDGNSRGFGFVAFEDPDAAERAC 303
+ ++V +++ L+++ KYGRI + + V + G SRG+GFV +E RA
Sbjct: 63 YCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAY 122
Query: 304 IELNGKELVEGKPLYV 351
+ + L++G+ + V
Sbjct: 123 EDAH-HSLIDGREIIV 137
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG--FGFVAFEDPDAAERA 300
F +VYV+N D S +++ F+ +G I V + + G + FV FED + E A
Sbjct: 256 FKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 315
Query: 301 CIELNGKELVEGKPLYVGRAQKKAERQK 384
++ P+Y+G Q E ++
Sbjct: 316 ---------IKASPIYLGGRQVYIEERR 334
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
++YV+NL I + +EF FGTI V L R G VC++
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRT-RKDVMG-VCYA 302
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 37.1 bits (82), Expect = 0.009
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1
Query: 127 FTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG--FGFVAFEDPDAAERA 300
F +VYV+N D S +++ F+ +G I V + + G + FV FED + E A
Sbjct: 315 FKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 374
Query: 301 CIELNGKELVEGKPLYVGRAQKKAERQK 384
++ P+Y+G Q E ++
Sbjct: 375 ---------IKASPIYLGGRQVYIEERR 393
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
++YV+NL I + +EF FGTI V L R G VC++
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRT-RKDVMG-VCYA 361
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.1 bits (82), Expect = 0.009
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +1
Query: 109 GEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD--DGNSRGFGFVAFEDP 282
G + ++ V+N D E L++ FE++G + + +D G RGF FV F D
Sbjct: 40 GRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIP-RDYYSGQPRGFAFVEFVDA 98
Query: 283 DAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRK 399
A A +N + G+ + V A + +R +E++ K
Sbjct: 99 YDAGEAQRSMNRRSFA-GREITVVVASESRKRPEEMRVK 136
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 178 LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVG 354
L +F KYG++ + + G+SRGF FV ++ D A +A L+G+ +V+G+ + V
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGR-VVDGREITVQ 90
Query: 355 RAQKKAERQK 384
A+ +K
Sbjct: 91 FAKYGPNAEK 100
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 36.7 bits (81), Expect = 0.012
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 178 LKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVG 354
L +F KYG++ + + G+SRGF FV ++ D A +A L+G+ +V+G+ + V
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGR-VVDGREITVQ 90
Query: 355 RAQKKAERQK 384
A+ +K
Sbjct: 91 FAKYGPNAEK 100
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD-DGNSRGFGFVAFEDPDAAERAC--- 303
++V ++ K F ++G IT VMY RGFGF++++ +A ++
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 304 -IELNGKELVEGK 339
ELNGK +VE K
Sbjct: 95 FHELNGK-MVEVK 106
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 36.3 bits (80), Expect = 0.015
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 88 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGF 264
+ R + E T +YV +D+ L+ F K G++ S VM SRGF F
Sbjct: 58 RSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAF 117
Query: 265 VAFEDPDAAERACIELNGKELVEGK 339
V AER CI+ + ++EG+
Sbjct: 118 VTMSSLKDAER-CIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 35.9 bits (79), Expect = 0.020
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERACI 306
T +YV +D+ L+ F K G++ S VM SRGF FV AER CI
Sbjct: 71 TTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER-CI 129
Query: 307 ELNGKELVEGK 339
+ + ++EG+
Sbjct: 130 KYLNQSVLEGR 140
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCF 582
LYV L D +++ L F PFG I K L+ K FGFV F
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 35.5 bits (78), Expect = 0.027
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +1
Query: 88 KEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGF 264
+ER ++ + + ++N D L+D FE++G + + G RGFGF
Sbjct: 33 RERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGF 92
Query: 265 VAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 393
V + + A A +N K ++ G+ + + A++ + +E++
Sbjct: 93 VKYRYAEDAAEAMKRMNHK-VIGGREIAIVFAEENRKTPQEMR 134
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV N D + ++D+F KYG + ++ K G+ FV FED A+ A +
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVV--QIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 316 G 318
G
Sbjct: 67 G 67
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV N D + ++D+F KYG + ++ K G+ FV FED A+ A +
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVV--QIDLKIPPRPPGYAFVEFEDARDADDAIYGRD 66
Query: 316 G 318
G
Sbjct: 67 G 67
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
VYV N D + ++D+F KYG + ++ K G+ FV F+D AE A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVV--QIDLKVPPRPPGYAFVEFDDARDAEDA 61
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
VYV N D + ++D+F KYG + ++ K G+ FV F+D AE A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVV--QIDLKVPPRPPGYAFVEFDDARDAEDA 61
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
VYV N D + ++D+F KYG + ++ K G+ FV F+D AE A
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVV--QIDLKVPPRPPGYAFVEFDDARDAEDA 61
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 34.3 bits (75), Expect = 0.062
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG-FGFVAFEDPDAAERACIEL 312
+Y+KN D + E LK +FE +G+I + G +GFV + + + RA
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRY 435
E ++G L A+ +A+++ KS+ Y
Sbjct: 330 ERYE-IDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNY 369
>At2g15500.1 68415.m01774 hypothetical protein
Length = 132
Score = 34.3 bits (75), Expect = 0.062
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +1
Query: 331 EGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 447
+ K V RAQKK+ER+ ELK +EQ E ++Q N
Sbjct: 39 DDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 22 IEKVNGMLLNGKMVYVGRFIPRKE 93
+ K+ GMLLN K VYVG F+ K+
Sbjct: 1 MSKLIGMLLNDKQVYVGPFLRGKK 24
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 34.3 bits (75), Expect = 0.062
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
+YV N D ++D+F KYG I + K G+ FV FEDP A+ A +
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVD--IDLKIPPRPPGYAFVEFEDPRDADDAIYGRD 66
Query: 316 G 318
G
Sbjct: 67 G 67
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.9 bits (74), Expect = 0.082
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
GV L+V L +++ + L K F+P GT+ + + + GRS F ++ FS
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRS--FAYIDFS 55
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 184 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 363
D F G + S +++ + G+GFV F P A A + NG+ L + K +++G A+
Sbjct: 700 DFFNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHK-IFLGVAK 758
Score = 33.5 bits (73), Expect = 0.11
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Frame = +1
Query: 184 DMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRA- 360
D F+ G++ S ++ K +G GFV F + A++A NG+ L G L +G A
Sbjct: 582 DFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKNGEYLC-GNKLILGMAS 640
Query: 361 -----QKKAE---RQKELKRKFEQ-----LKSERLTRYQGVNLYVKNLDDTIDDERLRKE 501
Q K E +Q+ L + E+ ++S T + ++ D + R +
Sbjct: 641 CENIAQPKYEDYIQQESLPIEEEETPPKIVQSGANTLGCSIQAAAFSMTDILSFHFYRLD 700
Query: 502 FA-PFGTITSAKVMLE-DGRSKGFGFVCFSSP 591
F G + S ++++ + + G+GFV F+SP
Sbjct: 701 FFNDVGEVVSVRLIVSPESKHVGYGFVEFASP 732
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 33.9 bits (74), Expect = 0.082
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR-GFGFVAFEDPDAAERACIE 309
++ VK+ + + +++ +F+++G I ++ + NS + FV FE+ DAA+RA I+
Sbjct: 551 HIRVKDLPPNATVALVESVFKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRA-IQ 609
Query: 310 LNGKELVEGKPLYVGRAQ 363
+ V+G YV + Q
Sbjct: 610 ASPLN-VDGHTTYVEQKQ 626
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.082
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 103 ELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFED 279
E ++ ++V + + E L +FE YG I V+ K G ++GFGFV F+
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 280 PDAAERACIE 309
A+ A E
Sbjct: 155 RKGAKEALKE 164
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
++V L E L F +G I V+++ G++KGFGFV F +
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.082
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 103 ELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMY-KDDGNSRGFGFVAFED 279
E ++ ++V + + E L +FE YG I V+ K G ++GFGFV F+
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 280 PDAAERACIE 309
A+ A E
Sbjct: 155 RKGAKEALKE 164
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 588
++V L E L F +G I V+++ G++KGFGFV F +
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRGFGFVAFEDPDAAERA 300
VY+ N E SD +L D+ + GR+ H K+ +GF F +E + A+ A
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 33.5 bits (73), Expect = 0.11
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Frame = +1
Query: 70 GRFIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNS 249
G + E +E E+A L ++Y+K D + +L++ F+K+G I ++ + +
Sbjct: 294 GANVAVNENNQE-NERA-LGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQ-KG 350
Query: 250 RGFGFVAFED----PDAAERACIELNGKELV 330
FGFV FE A E + + LNG ++V
Sbjct: 351 FCFGFVEFESASSMQSAIEASPVMLNGHKVV 381
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 430 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 588
R G ++Y+K L L EF FG I + + + + FGFV F S
Sbjct: 308 RALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFES 360
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRG-FGFVAFEDPDAAERA 300
+Y+KN D + E LK +FE +G+I + G +GFV + + + RA
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRA 91
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VYV N + E ++ F+ G + ++ G +GF +V F + +A + A ++L
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA-LQL 148
Query: 313 NGKELVEGKPLYVGRAQKKAERQKE 387
N EL G+ L V + K+
Sbjct: 149 NESEL-HGRQLKVSPKRTNVPGMKQ 172
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCF 582
++YV N+D E ++ F GT+ ++++ G+ KGF +V F
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
+VYV N + E ++ F+ G + ++ G +GF +V F + +A + A ++L
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEA-LQL 148
Query: 313 NGKELVEGKPLYVGRAQKKAERQKE 387
N EL G+ L V + K+
Sbjct: 149 NESEL-HGRQLKVSPKRTNVPGMKQ 172
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCF 582
++YV N+D E ++ F GT+ ++++ G+ KGF +V F
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEF 136
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFS 585
G LY+ NLD + +E +++ FA G + V + GRSKG V +S
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYS 134
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFS 585
G LY+ NLD + +E +++ FA G + V + GRSKG V +S
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYS 70
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFS 585
G LY+ NLD + +E +++ FA G + V + GRSKG V +S
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYS 136
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.7 bits (71), Expect = 0.19
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFS 585
G LY+ NLD + +E +++ F+ G + + + GRSKG V FS
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFS 156
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
+ VYV N ++ L+D F +G + S V + G + F+ FEDP A A
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG----YAFLDFEDPRDARDAIRA 57
Query: 310 LNGK 321
L+GK
Sbjct: 58 LDGK 61
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSP 591
+YV NLD + + L EF FG + S V R G+ F+ F P
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA---RRPPGYAFLDFEDP 48
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 32.7 bits (71), Expect = 0.19
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
++YV N D + ++D+F KYGRI + K + FV FE AE A
Sbjct: 8 SIYVGNLPGDIREHEIEDIFYKYGRIVD--IELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 313 NGKELVEGKPLYV-----GRAQKKAERQ 381
+G L +G L V GR Q ++R+
Sbjct: 66 DGYNL-DGCRLRVELAHGGRGQSSSDRR 92
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/87 (21%), Positives = 40/87 (45%)
Frame = +1
Query: 133 NVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIEL 312
++YV N + E ++ F+ G + ++ G +GF +V F + +A + + I L
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI-L 162
Query: 313 NGKELVEGKPLYVGRAQKKAERQKELK 393
N EL G+ + V + ++ +
Sbjct: 163 NESEL-HGRQIKVSAKRTNVPGMRQFR 188
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 445 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCF 582
++YV N+D E +++ F GT+ ++ + G+ KGF +V F
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF 150
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.9 bits (69), Expect = 0.33
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +1
Query: 85 RKEREKELGEKAK--LFTNVYVKNFGEDFSDEMLKDMFEKYGRITS-HKVMYKDDGNSRG 255
+ +RE++ GE+ V V ++ L++ F + G + V K RG
Sbjct: 3 KNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRG 62
Query: 256 FGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFE 405
F FV F + RA IEL V G+ + V +A + Q+ + E
Sbjct: 63 FAFVKFALQEDVNRA-IELKNGSTVGGRRITVKQAAHRPSLQERRTKAAE 111
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 460 NLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS 558
N ++D R+ KE+AP GT+T VML G +
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGET 283
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 31.5 bits (68), Expect = 0.44
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSS 588
L V+ LD+ D+E LR EF+ I +++ + S+GF FV F S
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYS 508
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDD-GNSRGFGFVAFEDPDAA------- 291
V VK ++E L + ++G + +V+ + + G SRGF F+ F DAA
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRI 359
Query: 292 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKF 402
E I L+G++L+ GRA ++ +R +
Sbjct: 360 EHDGIVLDGRKLMFHYSQPTGRAGVSRRQEHASRRSY 396
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 130 TNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIE 309
+ VYV N ++ L+D F +G I S V + G + F+ FED A A E
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG----YAFLDFEDSRDARDAIRE 57
Query: 310 LNGK 321
++GK
Sbjct: 58 VDGK 61
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
+YV NLD + + L EF FG I S V R G+ F+ F
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA---RRPPGYAFLDF 45
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 79 IPRKER-EKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEKYGRI 210
+P KER +K L E + L +K++ +FSDE ++YGR+
Sbjct: 338 LPLKERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRL 382
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
L+V+N++ +++D L F PFG I S + +S+GF + +
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISY 228
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
++V+N D L +FE +G I S K SRGF +++ D AA A
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRSLYTACK----SRGFVMISYYDIRAAHAA 237
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
L+V+N++ +++D L F PFG I S + +S+GF + +
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISY 241
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERA 300
++V+N D L +FE +G I S K SRGF +++ D AA A
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRSLYTACK----SRGFVMISYYDIRAAHAA 250
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++V+N + D L +FE+YG I + +Y RGF +++ D +A A L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDI---RTLY-TTCKHRGFVMISYYDIRSARMAMRSLQ 225
Query: 316 GKEL 327
K L
Sbjct: 226 NKPL 229
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 136 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERACIELN 315
++V+N + D L +FE+YG I + +Y RGF +++ D +A A L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDI---RTLY-TTCKHRGFVMISYYDIRSARMAMRSLQ 225
Query: 316 GKEL 327
K L
Sbjct: 226 NKPL 229
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 555
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
subunit, mitochondrial (PDHE1-A) identical to SP|P52901
Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
{Arabidopsis thaliana}
Length = 389
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 88 KEREKELGEKAKLFTNVYVKNFGED 162
K ++ + E ++LFTNVYVK FG +
Sbjct: 351 KAKDCPMPEPSELFTNVYVKGFGTE 375
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSS 588
L+V L+ +DE L F+ FGT+ SA V+ + G S + F+ F +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFEN 293
>At2g38250.1 68415.m04697 DNA-binding protein-related contains
similarity to DNA-binding protein GI:170271 from
[Nicotiana tabacum]
Length = 289
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 355 RAQKKAERQKELKRKFEQLKSERL 426
R +++AE+++E +RK E+L+ ERL
Sbjct: 225 REKERAEKEEEWRRKMEELEKERL 248
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 439 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSS 588
G ++YV+NL +L + F FG I + + + +G FGFV F +
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFET 343
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.1 bits (62), Expect = 2.3
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 166 SDEMLKDMFEKYGRITSHKVM-YKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKP 342
+D L+ KYG + K K G S+G+ V F DP AA LNG G+P
Sbjct: 246 TDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPF-NGRP 304
Query: 343 LYV 351
V
Sbjct: 305 CVV 307
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 29.1 bits (62), Expect = 2.3
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 4/153 (2%)
Frame = +1
Query: 121 KLFTNVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGF---GFVAFEDPDAA 291
+L+ N Y+ NF + + L+ + TS K G+S+ G +
Sbjct: 370 QLYYNNYMSNFKLEHAWRELRHNKKWCSTYTSENS--KGGGSSKRTKLNGGGVYSSSCNP 427
Query: 292 ERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDD 471
E I L+G+E V +PL V ++ K+ E++ K E+ +++ +R + NL+V + ++
Sbjct: 428 ESVPIALDGEEQVMDRPLGV-KSSKQKEKKVATKTMLEEREADSRSRLE--NLWVLDEEE 484
Query: 472 TIDDERLR-KEFAPFGTITSAKVMLEDGRSKGF 567
+ D L K + K M+E+ + F
Sbjct: 485 QVMDLPLGVKSSKQKERKVATKTMIEEREAANF 517
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +1
Query: 358 AQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 537
+Q+ +R + E + E L+R L+V+N+D +I+D L F FG + +
Sbjct: 187 SQRDGKRGSNVSTVAEHPQGEILSRI----LFVRNVDSSIEDCELGVLFKQFGDV---RA 239
Query: 538 MLEDGRSKGFGFVCF 582
+ G+++GF V +
Sbjct: 240 LHTAGKNRGFIMVSY 254
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 127 FTNVYVKNFGEDFS-DEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVAFEDPDAAERAC 303
F +YV+ FG FS D+ +K K+ + N F+ A E +
Sbjct: 342 FQTIYVEGFGSSFSEDDDIKSALSKHFSVCGEITRVFVPRNPSTGAIKGFKAKKALELSG 401
Query: 304 IELNGKELV 330
++ GKELV
Sbjct: 402 SKMTGKELV 410
>At3g12930.1 68416.m01611 expressed protein contains Pfam domain
PF02410: Domain of unknown function DUF143
Length = 238
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 139 YVKNFGEDFSDEMLKDMFEKYGRI 210
++ N ED +DEM D+F KYG++
Sbjct: 78 FLSNVSED-TDEMFDDLFNKYGKV 100
>At4g12440.2 68417.m01969 adenine phosphoribosyltransferase,
putative strong similarity to SP|P31166 Adenine
phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT)
{Arabidopsis thaliana}; contains Pfam profile PF00156:
Phosphoribosyl transferase domain
Length = 182
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +1
Query: 283 DAAERACI----ELNGKELVEGKPLYV 351
+ E AC+ EL G+E +EGKPLYV
Sbjct: 151 EVIECACVIELPELKGRERLEGKPLYV 177
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSS 588
LYV NLD ++ + + F+ FG + V+ + +S+G FV + S
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVS 107
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 319 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVN 447
K+ ++ Y QK+ + K+K E + ER+T+ QG N
Sbjct: 508 KQQLDDSERYKLEYQKRYDESNNDKKKLEDIYRERITKLQGEN 550
>At1g72580.1 68414.m08393 hypothetical protein
Length = 98
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 10 ANKSIEKVNGM-----LLNGKMVYVGRFIPRKEREKELGEKAKLFTNV 138
+++ +EK N M LLN + +G+ +P KE E+EL E F N+
Sbjct: 50 SDEEMEKFNQMMNCVKLLNNCLTKIGQSLPLKEGERELVEVEVDFKNI 97
>At4g27370.1 68417.m03929 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1126
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 319 KELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVK 459
K LVE K + ++ AE + LK +FE+ K + TR + V+
Sbjct: 1063 KSLVEVKSDSISNRKQHAEELRRLKSRFEKWKKDYKTRLRETKARVR 1109
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 247 SRGFGFVAFEDPDAAERACIELNGKELVEG--KPLYVGRAQKKAERQKE 387
SRG GFV + + A A LNG + G +PL V A+ K + E
Sbjct: 8 SRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGE 56
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 325 LVEGKPLYVGRAQKKAERQKELKRKFEQLKSER 423
L E P Y R + ER+K +K K +Q ++ER
Sbjct: 554 LDEKYPAYKDRHKLAVEREKHIKHKADQARAER 586
>At5g23020.1 68418.m02691 2-isopropylmalate synthase 2 (IMS2)
identical to 2-isopropylmalate synthase (IMS2)
[Arabidopsis thaliana] GI:12330689
Length = 503
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 142 VKNFGEDFSDEMLKDMFEKYGRITSHKVMYKD 237
+K G + SDE D+F +Y +T K D
Sbjct: 436 LKELGYEISDEKFNDIFSRYRELTKDKKRITD 467
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 355 RAQKKAERQKELKR---KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAP 510
+ +KKA+R KE K+ K +Q K + Q + + DDT++++ +E P
Sbjct: 133 KKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPP 187
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +1
Query: 214 SHKVMYKDDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELK 393
S ++M +++ SR + D ++ K +++ +KK E ++E K
Sbjct: 200 SRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVIDMLVKKNAEMEKKKEEERERK 259
Query: 394 RKFEQLKSERLTRYQ 438
+K E+ + ER Y+
Sbjct: 260 KKMEKERLERAMNYE 274
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
+YV NLD + + L EF FG + + V R G+ F+ F
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEF 45
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF 582
+YV NLD + + L EF FG + + V R G+ F+ F
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEF 45
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +1
Query: 322 ELVEGKPLYVGRAQKKAERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKE 501
E+++ K + + + +KE +F+ L+ ERL + + L V+ + + +DD RL++E
Sbjct: 559 EILDEKQAVYNKERIRISEEKEKFERFQLLEGERLKKEESA-LRVQIMQE-LDDIRLQRE 616
>At5g18610.1 68418.m02203 protein kinase family protein contains
eukaryotic protein kinase domain, PROSITE:PS00107
Length = 513
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 307 ELNGKELVEGKPLYVGRAQKKAERQKELKRK 399
+L G+E G P VGR+ + R ++L R+
Sbjct: 452 DLEGQESQRGSPASVGRSSRGTPRNRDLDRE 482
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +1
Query: 448 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
+YV ++D + +E+L F FG + ++ + F F+ F+
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFT 197
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 27.1 bits (57), Expect = 9.4
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +1
Query: 76 FIPRKEREKELGEKAKLFTNVYVKNFGEDFSDEMLKDMFEK-YGRITSHKVMYKDDGNSR 252
F+PR E E+E+ + +Y N + S +++ FE G +T +++ D +S
Sbjct: 225 FLPRSEDEREMCTR-----TIYCTNIDKKVSQADVRNFFESACGEVTRLRLL-GDQLHST 278
Query: 253 GFGFVAFEDPDAAERACIELNGKELVEG-KPLYV 351
FV F D+A A LN +V G +P+ V
Sbjct: 279 RIAFVEFALADSALSA---LNCSGMVVGSQPIRV 309
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 406 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 585
+ K +R + Y+G N+ LDD DD+ LR + +S+ + S GF V S
Sbjct: 3 ETKPKRDSEYEGSNIKRMRLDD--DDDVLRSPTRTLSSSSSSSLAYSVSDSGGFCSVALS 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.137 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,609
Number of Sequences: 28952
Number of extensions: 216825
Number of successful extensions: 1352
Number of sequences better than 10.0: 220
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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