Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0876
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    35   0.006
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    28   0.53 
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    25   3.7  
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||...    25   3.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   3.7  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   4.9  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    25   4.9  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 25/111 (22%), Positives = 47/111 (42%)
 Frame = +1

Query: 7   DIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMCR 186
           D  Y  MPL+H  G    +      G    +  KFS  +++ + I++ AT    +  + +
Sbjct: 203 DTSYVVMPLFHVHGLLCGLLSTLASGGCAVVPPKFSAHSFWKEFIQYGATWYTAVPTIHQ 262

Query: 187 YILATPPSATDRQHKVRTVYGNGMRPTIWTEFVKRFNIKRVVEFYGATEGN 339
            +L TPP     + +      + + P + ++    F    V+E Y  TE +
Sbjct: 263 ILLRTPPPKPLPRIRFIRSCSSPLAPPVLSKLEATFRAP-VLEAYAMTEAS 312


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 321 IKLDDTFDVEAFDEFCPDGWPHSIAVYGSNFVLPVSCGRRCC*DIPTHLPNVVSGRC 151
           +K  + +  E  D+ C       I +   NF  P  CG R C     H+   ++GRC
Sbjct: 2   LKTQEIYSSEDEDDMCCPLCMEEIDISDKNFK-PCQCGYRVCRFCWHHIKEDLNGRC 57


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 306 TFDVEAFDEFCPD-GWPHSIAVYGSNFVLPVSCGRRCC*DIPTHLPNVV 163
           TFD+E   EFCP       +++Y S  + P S         P   PNV+
Sbjct: 52  TFDMEDDLEFCPSLSDEELVSIYQSTGLSPTSSSPSLSPMTPNLYPNVL 100


>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +3

Query: 63  WSG-LHIRVHCSFESEIFGVCIFPGLH 140
           W+G L I   C F   I+G+C+ P  H
Sbjct: 66  WTGPLLITGSCLFSGTIYGLCLLPKGH 92


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +1

Query: 91   VALRAKFSVSAYFPDCIKFKATAAHYIGEMCRYILATPPSATDRQHKVRTVYGNGMRPTI 270
            +  + K  + +Y  D + F       +G      L T   ++DR + V   +GN   P  
Sbjct: 895  IPYQVKNLLESYLADFVDFDDLEVVELGRSLAVELGTRIVSSDRDNFVLPAFGN-WTPDT 953

Query: 271  WTEFVKRFNIKR 306
             +EF+  + I++
Sbjct: 954  SSEFMAEYTIRQ 965


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 36   SFSWRVYFSWSGL 74
            +F+WRVYF W  +
Sbjct: 1377 AFNWRVYFGWCSI 1389


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -1

Query: 317 NSTTRLMLKRLTNSVQMVGLIPLPYTVRTLCCLSVADGGVARIYRHISPM 168
           ++T R++   L  +++ + +  L     +LC + +   GV+ +Y HI  M
Sbjct: 639 DATVRVLSLDLYTTLENLSVQALSSPANSLCIIPMNVNGVSTLYLHIGLM 688


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 420 RYRVNCGDDSRYKSYCTCLVVDVYDICVAF 331
           RY++ C   S Y ++C   V    D+C  F
Sbjct: 95  RYQLYCESKSMYTTHCVIHVAVPQDLCRKF 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,789
Number of Sequences: 5004
Number of extensions: 38350
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)