Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0876
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1051 - 22562840-22562971,22563474-22563576,22563701-225637... 34 0.042
08_01_1032 + 10447474-10448030,10448784-10449813 31 0.29
02_01_0577 + 4280590-4281225,4281749-4282102,4282214-4282412,428... 29 1.2
11_06_0359 - 22683236-22683484,22684069-22684263,22684450-226847... 29 2.1
12_02_0658 + 21608474-21609401,21609996-21610012 28 2.7
02_05_0230 + 27029725-27030871,27030995-27031113,27031225-270313... 28 2.7
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 28 3.6
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 27 4.8
06_01_0574 + 4051723-4051805,4051913-4052366 27 6.3
03_04_0150 - 17720697-17720800,17721737-17722172 27 6.3
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 27 8.3
>10_08_1051 -
22562840-22562971,22563474-22563576,22563701-22563768,
22563896-22564053,22564706-22564895,22565162-22566205
Length = 564
Score = 34.3 bits (75), Expect = 0.042
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +1
Query: 1 KNDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEM 180
++++ +P++H G + GCTV + +F+V K+K T + +
Sbjct: 244 RDNVYLAALPMFHVYGLSLFAVGLLSLGCTVVVMRRFNVDDAVKAIRKYKVTHLPLVPPI 303
Query: 181 CRYIL-ATPPSATDRQHKVRTVYGNGMRPTIWTEFVKRFNIKRVVEFYGATEGNA 342
+L A PP D +V + + T+ F+ F ++ YG TE A
Sbjct: 304 MSALLRANPPLELDSLLQVSS-GAAPLNHTLIHHFLHAFPHVDFIQGYGMTESTA 357
>08_01_1032 + 10447474-10448030,10448784-10449813
Length = 528
Score = 31.5 bits (68), Expect = 0.29
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 369 CLVVDVYDICVAFCCAIKLDDTFD-VEAFDEFCPDGWPHSIAVYGS 235
C+ D + C K+ + FD + +DE GW SIAVY S
Sbjct: 277 CITPDGTSYTLMVSCFAKVGNLFDTLRVYDEMKKRGWTPSIAVYNS 322
>02_01_0577 +
4280590-4281225,4281749-4282102,4282214-4282412,
4284991-4285204,4285299-4285401,4285481-4285639
Length = 554
Score = 29.5 bits (63), Expect = 1.2
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 4/115 (3%)
Frame = +1
Query: 1 KNDIMYCPMPLYH--SAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIG 174
K+D++ C +PL+H S + G G T+ + KF + A K T A ++
Sbjct: 224 KDDVILCLLPLFHIYSLNSVLLAG--LRAGSTIVIMRKFDLGALVDLVRKHNITIAPFVP 281
Query: 175 EMCRYILATPPSATDRQHKVRTVYGNG--MRPTIWTEFVKRFNIKRVVEFYGATE 333
+ I +P + +R V M + F+ + + + YG TE
Sbjct: 282 PIVVEIAKSPRVTAEDLASIRMVMSGAAPMGKDLQDAFMAKIPNAVLGQGYGMTE 336
>11_06_0359 -
22683236-22683484,22684069-22684263,22684450-22684734,
22686424-22686624,22688853-22689107,22689178-22689328,
22689466-22689535,22690176-22690434,22691333-22691461
Length = 597
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 238 TVYGNGMRPTIWTEFVKRFNIKRVVEFYGATEGNANIVNIDNKTGAIGFVSRIIPAVYPI 417
TV GM + T N+ R YG G +V +++ +GF R P V +
Sbjct: 530 TVGSFGMLQNVITSLKFTTNLNRTYGPYGKGGGTPFVVPVEDAASIVGFFGRAGPCVEAV 589
Query: 418 AI 423
+
Sbjct: 590 GV 591
>12_02_0658 + 21608474-21609401,21609996-21610012
Length = 314
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 10 IMYCPMPL-YHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMCR 186
+ + P+PL H+ G +G GC +LR SV+ C+K H GE
Sbjct: 96 LRHMPLPLPMHAITGNHGMGDKLALGCPRSLRGIASVTRRGKACLKL--AGVHVTGERLP 153
Query: 187 Y 189
Y
Sbjct: 154 Y 154
>02_05_0230 +
27029725-27030871,27030995-27031113,27031225-27031349,
27031491-27031590,27031680-27031757,27032818-27032901,
27033077-27033162,27033869-27034049,27034596-27034646
Length = 656
Score = 28.3 bits (60), Expect = 2.7
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +1
Query: 40 SAGGCISVGQAFIFGCTVALRAKFSVSAYFPDC 138
+AGGC S+ +F+F + ++ + V + + +C
Sbjct: 431 TAGGCSSIATSFVFTPSECIKQQMQVGSQYQNC 463
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 217 DRQHKVRTVYGNGMRPTIWTEFVKRFNIK 303
DR HK R +Y +G +W E F IK
Sbjct: 199 DRFHKARMIYTSGYNDQMWIEKAHVFYIK 227
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +2
Query: 122 HISRIALN--SKQRPLTTLGRCVGIS 193
H S + LN SK RPLT + RC G++
Sbjct: 21 HASPLTLNNGSKHRPLTPMRRCRGVA 46
>06_01_0574 + 4051723-4051805,4051913-4052366
Length = 178
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 351 YDICVAFCCAIKLDDTFDVEAFDEFCPDGWPHSIAVYGSNFV 226
YD C ++ F + DE P PHS A S+F+
Sbjct: 47 YDEAARIMCGPRVRTNFPHDVADEAAPPPPPHSAAAASSSFL 88
>03_04_0150 - 17720697-17720800,17721737-17722172
Length = 179
Score = 27.1 bits (57), Expect = 6.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 268 WLASFHCRIRFELCVACQLR 209
W + C+IR +L +ACQ+R
Sbjct: 82 WKLALACQIRMKLALACQIR 101
>02_05_0311 + 27782110-27782326,27784121-27784268,27784394-27784478,
27784555-27784650,27785666-27785731,27785900-27785998,
27786145-27786258,27786468-27786578,27786672-27786734,
27786816-27786908,27787960-27788073,27788440-27788505,
27788782-27788994,27789086-27789116,27789459-27791587
Length = 1214
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 161 AAVALNLMQSGKYADTENFALKATVHPN 78
A+V L +SG++A+ E F VHPN
Sbjct: 1061 ASVVDLLGRSGRFAEAEQFIRNMPVHPN 1088
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,258,027
Number of Sequences: 37544
Number of extensions: 255835
Number of successful extensions: 586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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