Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0876
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...   167   4e-42
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...   141   2e-34
U88308-1|AAB42324.2|  461|Caenorhabditis elegans Hypothetical pr...    43   1e-04
U88308-2|AAM15557.1|  313|Caenorhabditis elegans Hypothetical pr...    39   0.001
U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical pr...    34   0.049
AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    31   0.26 
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    31   0.26 
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    31   0.26 
Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical pr...    30   0.60 
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z81081-2|CAB03091.2|  451|Caenorhabditis elegans Hypothetical pr...    28   3.2  
U53154-4|AAC25851.1|  346|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z69903-2|CAA93774.1|  364|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    26   9.8  

>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score =  167 bits (405), Expect = 4e-42
 Identities = 71/143 (49%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
 Frame = +1

Query: 1   KNDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEM 180
           K+D++Y  MP+YHSA G + +G    FG T  +R KFS S ++ DC+K+  TA  YIGE+
Sbjct: 283 KSDVVYITMPMYHSAAGIMGIGSLIAFGSTAVIRKKFSASNFWKDCVKYNVTATQYIGEI 342

Query: 181 CRYILATPPSATDRQHKVRTVYGNGMRPTIWTEFVKRFNIKRVVEFYGATEGNANIVNID 360
           CRY+LA  P   ++QH VR ++GNG+R  IW EFV RF IK++ E YG+TEGN+NIVN+D
Sbjct: 343 CRYLLAANPCPEEKQHNVRLMWGNGLRGQIWKEFVGRFGIKKIGELYGSTEGNSNIVNVD 402

Query: 361 NKTGAIGF--VSRIIPAVYPIAI 423
           N  GA GF  +   I ++YP+ +
Sbjct: 403 NHVGACGFMPIYPHIGSLYPVRL 425


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score =  141 bits (342), Expect = 2e-34
 Identities = 62/142 (43%), Positives = 94/142 (66%), Gaps = 2/142 (1%)
 Frame = +1

Query: 4   NDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMC 183
           +D MY  MP+YH+A G + VGQA + G +  +R KFS S ++ DC+K+  T + YIGE+C
Sbjct: 315 SDRMYVSMPIYHTAAGILGVGQALLGGSSCVIRKKFSASNFWRDCVKYDCTVSQYIGEIC 374

Query: 184 RYILATPPSATDRQHKVRTVYGNGMRPTIWTEFVKRFNIKRVVEFYGATEGNANIVNIDN 363
           RY+LA P    + +H++R + GNG+R  IW  FV RF + R+ E YG+TEG +++VNID 
Sbjct: 375 RYLLAQPVVEEESRHRMRLLVGNGLRAEIWQPFVDRFRV-RIGELYGSTEGTSSLVNIDG 433

Query: 364 KTGAIGF--VSRIIPAVYPIAI 423
             GA GF  +S +   ++P+ +
Sbjct: 434 HVGACGFLPISPLTKKMHPVRL 455


>U88308-1|AAB42324.2|  461|Caenorhabditis elegans Hypothetical
           protein C32E8.6a protein.
          Length = 461

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
 Frame = +1

Query: 4   NDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMC 183
           +DI Y  +P +H AGG I++      GCTV +  +++   +  +C  +K +    +  + 
Sbjct: 191 DDICYGVLPFFH-AGGLITILSMIFSGCTVLINERWNEHEFLANCQNYKVSVLFLVPPVL 249

Query: 184 RYILATPPSATDRQHKVRTVY--GNGMRPTIWTEFVKRF-NIKRVVEFYGATE 333
            +    P  ++     ++T+Y       P  + +  +R   ++ +++ YG +E
Sbjct: 250 NFFANHPLVSSYDLSALKTIYVGAAASPPENFAKVAERLPELENLIQLYGTSE 302


>U88308-2|AAM15557.1|  313|Caenorhabditis elegans Hypothetical
           protein C32E8.6b protein.
          Length = 313

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 18/81 (22%), Positives = 39/81 (48%)
 Frame = +1

Query: 4   NDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMC 183
           +DI Y  +P +H AGG I++      GCTV +  +++   +  +C  +K +    +  + 
Sbjct: 191 DDICYGVLPFFH-AGGLITILSMIFSGCTVLINERWNEHEFLANCQNYKVSVLFLVPPVL 249

Query: 184 RYILATPPSATDRQHKVRTVY 246
            +    P  ++     ++T+Y
Sbjct: 250 NFFANHPLVSSYDLSALKTIY 270


>U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical
           protein F41C3.3 protein.
          Length = 505

 Score = 33.9 bits (74), Expect = 0.049
 Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
 Frame = +1

Query: 4   NDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMC 183
           ND     +P YH  G   S+  +     T+  R+KF V     DCIK+   A   +G   
Sbjct: 206 NDYNLHALPFYHVHGLYYSLHCSLFSHSTMIWRSKFEVE----DCIKYMKNATVMMGVPT 261

Query: 184 RY--ILATPPSATDRQHKVRTVYGNGMRP-TIWT--EFVKRFNIKRVVEFYGATEG---N 339
            +  +LA+     +    VR V+ +G  P ++ T  EF +R   + ++E YG TE     
Sbjct: 262 FFSRLLASKNFNKEAFGNVR-VFISGSAPLSVSTIEEFRERTG-QVILERYGMTEAGVMT 319

Query: 340 ANIVNIDNKTGAIG 381
            N +N + K G +G
Sbjct: 320 TNPLNGERKAGTVG 333


>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 97  LRAKFSVSAYFPDCIKFKATAAHYIGEMCRYILATPPSATDRQHKVRTVYGNG-MRPTIW 273
           +R +F++   +  CI+  A     +   C  +      +    H+V   YG G   P I 
Sbjct: 321 VRGRFAMEMRYEACIRLAALHVQQVAYDCNILKENNKVSV---HRVEKEYGLGTFLPAIV 377

Query: 274 TEFVKRFNIKRVVEFY 321
            E VKR ++++ + FY
Sbjct: 378 LENVKRRDVRKHIRFY 393


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 97  LRAKFSVSAYFPDCIKFKATAAHYIGEMCRYILATPPSATDRQHKVRTVYGNG-MRPTIW 273
           +R +F++   +  CI+  A     +   C  +      +    H+V   YG G   P I 
Sbjct: 321 VRGRFAMEMRYEACIRLAALHVQQVAYDCNILKENNKVSV---HRVEKEYGLGTFLPAIV 377

Query: 274 TEFVKRFNIKRVVEFY 321
            E VKR ++++ + FY
Sbjct: 378 LENVKRRDVRKHIRFY 393


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 97  LRAKFSVSAYFPDCIKFKATAAHYIGEMCRYILATPPSATDRQHKVRTVYGNG-MRPTIW 273
           +R +F++   +  CI+  A     +   C  +      +    H+V   YG G   P I 
Sbjct: 360 VRGRFAMEMRYEACIRLAALHVQQVAYDCNILKENNKVSV---HRVEKEYGLGTFLPAIV 416

Query: 274 TEFVKRFNIKRVVEFY 321
            E VKR ++++ + FY
Sbjct: 417 LENVKRRDVRKHIRFY 432


>Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.3 protein.
          Length = 376

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = -3

Query: 318 KLDDTFDVEAFDEFCPDGWPHSIAVYGSNFVLPVSCGRRCC*DIPTHLPNVVSGRCFEFN 139
           ++ D FDVE  +E     WP S  ++   F LP          I   L NV++GR    N
Sbjct: 301 QISDLFDVEVKNEPIDTPWPSSQVLHTQKFCLPSEDHVL----IVLILNNVLTGRICHLN 356

Query: 138 AIREIC 121
            + E C
Sbjct: 357 HLAEDC 362


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 12  NVLSN-AFVSFSWRVYFSWSGLHIRVH 89
           N+L+N +F +F+W  YF W  LH +VH
Sbjct: 79  NILANYSFFTFNW--YFRWFYLHSKVH 103


>Z81081-2|CAB03091.2|  451|Caenorhabditis elegans Hypothetical
           protein F42D1.3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
 Frame = -1

Query: 377 IAPVLLSMFTIFALPSVAP*NST------TRLMLKRLTNSVQMVGLIPLPYTV 237
           I P+L+ +F +FA  +VA   S       T ++LK +  +  +VGL+PLP+T+
Sbjct: 64  IFPILV-LFAVFANAAVALVLSKKHMITPTNVVLKYMAIAELLVGLVPLPWTL 115


>U53154-4|AAC25851.1|  346|Caenorhabditis elegans Hypothetical
           protein C33G8.9 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
 Frame = +1

Query: 52  CISVGQAFIFGCTV-ALRAKFSVSAYFPDCI-KFKATAAHYIGEMCRYILATPPSATDRQ 225
           C+ VG A    C V A R K     + P  I      + + I   C  +  T  +  D  
Sbjct: 60  CVEVGMA---KCKVQATRQKNKEYVFLPCAITNISLLSCNIIPRSCSKLTCTVKNWPDLD 116

Query: 226 HKVRTVYGNGMRPTIWTEFVKR 291
            K R +YG  M    +T+F  R
Sbjct: 117 KKRRDLYGGSMYNLNFTQFSNR 138


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 156  GRSLHWGDVSVYPSNTSVRN*QATQSSNRIRQWNEANHLDRIRQTLQHQTCRRVLW 323
            G  L  G  +V  SN++ +     + ++   +W   +H+  IRQ +  Q  R V W
Sbjct: 1517 GGELRGGAWAVVDSNSAFKK-GCVEFADMHDRWQRMDHVGAIRQVVTLQKTRDVFW 1571


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 254 PLPYTVRTLCCLSVADGG 201
           P PY ++   C SVADGG
Sbjct: 554 PTPYALQPKICTSVADGG 571


>Z69903-2|CAA93774.1|  364|Caenorhabditis elegans Hypothetical
           protein F46F2.4 protein.
          Length = 364

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 223 QHKVRTVYGNGMRPTIWTEFVKRFNIKRVVEFYGATEGNANI 348
           QH   T    G+R   WT F+  + +  V  +Y  T   ANI
Sbjct: 2   QHPYTTCEHTGLR-IYWTMFITWYGVPSVYSYYFPTSWIANI 42


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 237 NRIRQWNEANHLDRIR 284
           NR++ WNEAN  DR++
Sbjct: 605 NRLQIWNEANSTDRLQ 620


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,422,748
Number of Sequences: 27780
Number of extensions: 222753
Number of successful extensions: 596
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)