Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0876
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.15 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 232 VRTVYGNGMRPTIWTEFVKRFNIKRVVEFYGA-TEGNA 342
           +RTV     +  +W E +K FN  +V+  + + T+G A
Sbjct: 145 LRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSDTDGRA 182


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 175 EMCRYILATPPSATDRQHKVRTVYGNGMR 261
           +M R I  TP      QHK   +Y N M+
Sbjct: 318 DMARIIQITPKRIQYAQHKENELYANLMK 346


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 175 EMCRYILATPPSATDRQHKVRTVYGNGMR 261
           +M R I  TP      QHK   +Y N M+
Sbjct: 356 DMARIIQITPKRIQYAQHKENELYANLMK 384


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 368 VLLSMFTIFALPSVAP*NSTTRLMLKRLTNSVQMVGLIPLPYT 240
           VL ++  I A+   +   + T + +  L  +  MVGL  LP++
Sbjct: 80  VLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLPFS 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,166
Number of Sequences: 438
Number of extensions: 2776
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)