Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0876
(425 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g38120.1 68418.m04592 4-coumarate--CoA ligase family protein ... 32 0.14
At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase fam... 31 0.43
At1g77680.1 68414.m09044 ribonuclease II family protein weak sim... 29 1.3
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 27 4.0
At4g11440.1 68417.m01842 mitochondrial substrate carrier family ... 27 4.0
At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase fam... 27 4.0
At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 / 4-coumaroyl... 27 4.0
At1g65060.1 68414.m07375 4-coumarate--CoA ligase 3 / 4-coumaroyl... 27 4.0
At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containi... 27 4.0
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a... 27 4.0
At5g06540.1 68418.m00738 pentatricopeptide (PPR) repeat-containi... 27 5.3
At1g20510.2 68414.m02556 4-coumarate--CoA ligase family protein ... 27 5.3
At1g20510.1 68414.m02555 4-coumarate--CoA ligase family protein ... 27 5.3
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 27 7.0
At2g20310.1 68415.m02372 expressed protein 27 7.0
At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 / a... 26 9.3
At5g03870.1 68418.m00360 glutaredoxin family protein contains Pf... 26 9.3
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ... 26 9.3
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ... 26 9.3
At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [H... 26 9.3
>At5g38120.1 68418.m04592 4-coumarate--CoA ligase family protein /
4-coumaroyl-CoA synthase family protein similar to 4CL2,
Arabidopsis thaliana [gi:12229665], 4CL1, Nicotiana
tabacum [gi:12229631]; contains Pfam AMP-binding enzyme
domain PF00501
Length = 550
Score = 32.3 bits (70), Expect = 0.14
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Frame = +1
Query: 19 CPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMCRYILA 198
C +PL+H+ G V G TV + +F + K++AT + +L
Sbjct: 245 CTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVPP----VLV 300
Query: 199 TPPSATDRQHK------VRTVYGNG--MRPTIWTEFVKRFNIKRVVEFYGATEGN---AN 345
T + D+ K +RTV G + + F+K++ V + Y TE N A+
Sbjct: 301 TMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNGAGAS 360
Query: 346 IVNID--NKTGAIGFVS 390
I +++ + GA+G +S
Sbjct: 361 IESVEESRRYGAVGLLS 377
>At3g48990.1 68416.m05351 AMP-dependent synthetase and ligase family
protein similar to peroxisomal-coenzyme A synthetase
(FAT2) [gi:586339] from Saccharomyces cerevisiae;
contains Pfam AMP-binding enzyme domain PF00501;
identical to cDNA; identical to cDNA adenosine
monophosphate binding protein 3 AMPBP3
(AMPBP3)GI:20799714
Length = 514
Score = 30.7 bits (66), Expect = 0.43
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = +1
Query: 1 KNDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRA--KFSVSAYFPDCIKFKATAAHYIG 174
++D +PL+H G + + G V L A +FS + ++PD K+ AT +
Sbjct: 202 ESDSTVIVLPLFHVHGLLAGLLSSLGAGAAVTLPAAGRFSATTFWPDMKKYNATWYTAVP 261
Query: 175 EMCRYILATPPSATDRQH-KVRTV--YGNGMRPTIWTEFVKRFNIKRVVEFYGATE 333
+ + IL S + ++ K+R + + P I + + F V+E Y TE
Sbjct: 262 TIHQIILDRHASHPETEYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTE 316
>At1g77680.1 68414.m09044 ribonuclease II family protein weak
similarity to SP|P37202 Mitotic control protein dis3
{Schizosaccharomyces pombe}; contains Pfam profile
PF00773: RNB-like protein
Length = 1055
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 363 VVDVYDICVAFCCAIKLDDTFDVEA--FDEFCPDGWPHSIAVYGS 235
+V ++CVA C A+ + DT EA DE P +P +I ++ +
Sbjct: 984 LVSPCEVCVAKCSALSVHDTESPEAVSIDEVAPAVFPLTIQLFST 1028
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 26 CLCIIQLEGVFQLVRPSYSG 85
C C+ L GVF L PS+SG
Sbjct: 438 CHCVYPLTGVFTLRSPSFSG 457
>At4g11440.1 68417.m01842 mitochondrial substrate carrier family
protein
Length = 550
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 16 YCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDC 138
YC + + AGG S+ +FIF + ++ + VS+++ +C
Sbjct: 417 YCSLA-HCLAGGSASIATSFIFTPSERIKQQMQVSSHYRNC 456
>At1g76290.1 68414.m08860 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 546
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +1
Query: 10 IMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKAT 156
+ C +P+YH +G C + FG + + + F +K K T
Sbjct: 220 VYLCTVPMYHCSGWCY-IWTVTAFGGVIVCLREVNDEVIFDSIVKHKVT 267
>At1g65060.2 68414.m07376 4-coumarate--CoA ligase 3 /
4-coumaroyl-CoA synthase 3 (4CL3) identical to SP|Q9S777
4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3)
(4-coumaroyl-CoA synthase 3) {Arabidopsis thaliana}
Length = 495
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 4 NDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAA 162
ND++ C +PL+H + + G TV L KF + A + + T A
Sbjct: 250 NDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIA 302
>At1g65060.1 68414.m07375 4-coumarate--CoA ligase 3 /
4-coumaroyl-CoA synthase 3 (4CL3) identical to SP|Q9S777
4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3)
(4-coumaroyl-CoA synthase 3) {Arabidopsis thaliana}
Length = 561
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 4 NDIMYCPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAA 162
ND++ C +PL+H + + G TV L KF + A + + T A
Sbjct: 250 NDVILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIA 302
>At1g19290.1 68414.m02398 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 745
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = -3
Query: 354 VYDICVA-FCCAIKLDDT----FDVEAFDEFCPDGWPHSIAVYG 238
VY++ +A C A KL+D D+ + D F PD + ++I ++G
Sbjct: 562 VYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILIHG 605
>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
GI:3172025, GI:3172044; identical to cDNA putative
aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
Length = 1337
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 127 FPDCIKFKATAAHYIGEMCRYILATPPSATDRQHKVRT 240
FPD +K K H + + RY +TP S + Q + T
Sbjct: 210 FPDFLKEKIKCQHNVLDQTRYHWSTPGSVAELQEILAT 247
>At5g06540.1 68418.m00738 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 622
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 143 LMQSGKYADTENFALKATVHPN 78
L ++GK A+ ENF LK V PN
Sbjct: 396 LGRAGKLAEAENFILKMHVKPN 417
>At1g20510.2 68414.m02556 4-coumarate--CoA ligase family protein /
4-coumaroyl-CoA synthase family protein similar to
SP|P14912 and SP|P14913 from Petroselinum crispum;
contains Pfam AMP-binding enzyme domain PF00501
Length = 473
Score = 27.1 bits (57), Expect = 5.3
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Frame = +1
Query: 19 CPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMCRYIL- 195
C +P++H G +G T+ + +KF + K++AT+ + + ++
Sbjct: 236 CTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVN 295
Query: 196 -ATPPSATDRQHKVRTVYGNG--MRPTIWTEFVKRFNIKRVVEFYGATE 333
A A + TV G + + F +++ ++++ YG TE
Sbjct: 296 GADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTE 344
>At1g20510.1 68414.m02555 4-coumarate--CoA ligase family protein /
4-coumaroyl-CoA synthase family protein similar to
SP|P14912 and SP|P14913 from Petroselinum crispum;
contains Pfam AMP-binding enzyme domain PF00501
Length = 546
Score = 27.1 bits (57), Expect = 5.3
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Frame = +1
Query: 19 CPMPLYHSAGGCISVGQAFIFGCTVALRAKFSVSAYFPDCIKFKATAAHYIGEMCRYIL- 195
C +P++H G +G T+ + +KF + K++AT+ + + ++
Sbjct: 236 CTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVN 295
Query: 196 -ATPPSATDRQHKVRTVYGNG--MRPTIWTEFVKRFNIKRVVEFYGATE 333
A A + TV G + + F +++ ++++ YG TE
Sbjct: 296 GADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTE 344
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 405 CGDDSRYKSYCTCLVVDVYDICVAF 331
CGDDS Y YC + + C+ +
Sbjct: 37 CGDDSGYGYYCELCNIQAHVACIGW 61
>At2g20310.1 68415.m02372 expressed protein
Length = 430
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -3
Query: 420 RYRVNCGDDSRYKSYCTCLVVDVYDICVAFCCAIKLDD 307
+Y N +Y C C V D+ C +C A+ D
Sbjct: 125 KYAFNSTSHEKYCDMCHCYVCDIRAPCPYWCIAVSSID 162
>At5g05700.1 68418.m00627 arginine-tRNA-protein transferase 1 /
arginyltransferase 1 / arginyl-tRNA-protein transferase
1 (ATE1) identical to SP|Q9ZT48 Arginine-tRNA-protein
transferase 1 (EC 2.3.2.8) (R-transferase 1)
(Arginyltransferase 1) (Arginyl-tRNA--protein
transferase 1) {Arabidopsis thaliana}
Length = 632
Score = 26.2 bits (55), Expect = 9.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 133 PGNMQTPKISLSKLQCTR 80
P NMQ PK S+ K+ C R
Sbjct: 174 PSNMQIPKASVKKVFCAR 191
>At5g03870.1 68418.m00360 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 384
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 297 VEAFDEFCPDGWPHSIAVY 241
+E F E CP G HS+ +Y
Sbjct: 224 LEKFPEKCPPGGEHSVVIY 242
>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425
Length = 695
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 414 RVNCGDDSRYKSYCTCLVVDVYDICVAFCCAI 319
R NC K YC C VY C+ C I
Sbjct: 402 RCNCKKSKCLKLYCECFAAGVY--CIEPCSCI 431
>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
similar to glucan synthase GB:AAD11794 [Filobasidiella
neoformans var. neoformans]
Length = 1931
Score = 26.2 bits (55), Expect = 9.3
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -1
Query: 365 LLSMFTIFALPSVAP*NSTTRLMLKRLTNSVQMVGLIPLPYTVRTLCCLSV 213
L S+FTI + P N R L+ TNS+ M +P P +VR + SV
Sbjct: 1051 LYSLFTIKDSAAHVPRNLEARRRLQFFTNSLFMD--VPPPKSVRKMLSFSV 1099
>At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 507
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -3
Query: 384 KSYCTCLVVDVYDICVAFCCAIKLDDTFDVEAFDEFCPDGWPHS 253
K Y T L++ + C A ++ F+V+ P GW H+
Sbjct: 369 KFYITALIIPKQESTSDSCQATNEEEIFEVQDKQSLFPLGWIHT 412
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,730,650
Number of Sequences: 28952
Number of extensions: 200609
Number of successful extensions: 511
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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