Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0875
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    27   1.6  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   5.0  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   5.0  
SPCC330.10 |pcm1||mRNA capping methyltransferase|Schizosaccharom...    25   6.7  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   6.7  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    24   8.8  

>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 390 PPRSRAPAQPRHVLAEGGAARESQLPV---RIAACSRFNHLPVLCALKV 253
           PP S AP+ PR  +     A+   L     R+    + + L VLC  KV
Sbjct: 5   PPPSTAPSSPRRSIQRISDAKNKALTFNRRRLGLIKKAHELSVLCDAKV 53


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 109 WRCAPTFESANRYIAGTPI 165
           W+C  TFE  +RY+    I
Sbjct: 131 WKCVQTFEGHSRYVMSLAI 149


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 29/101 (28%), Positives = 42/101 (41%)
 Frame = +1

Query: 43  SKVFINRAKRILIVSSDGHLAQWRCAPTFESANRYIAGTPIVDQRGGVISVVVAKKNNHY 222
           S  F    + I  VS DG L  W+ +P F+ A   I      ++    I ++   K  HY
Sbjct: 195 SGFFSKDQQTIYTVSKDGALFVWKYSPLFQ-AGEVIDEEAEENKTRTHIWLI---KERHY 250

Query: 223 AVSSFEGEGGYFESTQNWKVVEPAAGGYAYGELTFPSRTAL 345
              + +     F  T N  VV  ++G +   EL  PS T L
Sbjct: 251 FNQNSKLRCAAFHPTSNLLVVGFSSGLFGIYEL--PSFTML 289


>SPCC330.10 |pcm1||mRNA capping
           methyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 298 GGYAYGELTFPSRTALREHVAGLRGGAGAWGDAVPVLRGGTSP 426
           GG   G  T P+   + +H+  L+ G   WG+ +  +R   SP
Sbjct: 247 GGVMIG--TIPNSDVIVKHIKMLKPGEKEWGNDIYKVRFPESP 287


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 293 AGSTTFQFCVLSKYPPSPS 237
           +G TTF  C+   + PSPS
Sbjct: 41  SGRTTFLRCIQGSFTPSPS 59


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 205 KKNNHYAVSSFEGEGGYFES 264
           + NN Y  S FEG G  F+S
Sbjct: 706 QSNNSYHNSGFEGTGNTFQS 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,407
Number of Sequences: 5004
Number of extensions: 28611
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)