Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0875
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06) 31 0.41
SB_20763| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19) 28 3.8
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 27 6.7
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_26370| Best HMM Match : Drf_FH1 (HMM E-Value=5.2) 27 8.8
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 31.1 bits (67), Expect = 0.41
Identities = 26/114 (22%), Positives = 49/114 (42%)
Frame = -3
Query: 354 VLAEGGAARESQLPVRIAACSRFNHLPVLCALKVSAFTLEGGDGIVVVFLRHNDGDDAPA 175
++AE +E+ + I C R + +L++ + G+ + L G+
Sbjct: 271 IIAESAGVQETSIKQGI--CERITNYTDTSSLRLEKGEAQVKKGVSIAGL----GETELT 324
Query: 174 LVDDGRAGDVPVRRLEGRRAPPLRQVPVA*HYQYALGSVYEDLRK*IGKSTSSD 13
L++DG + + + R+P VPV + G VY L+K I ++ SD
Sbjct: 325 LLEDGENAESETKESKISRSPISISVPVKVGDEKTKGYVYNVLKKEISNNSESD 378
>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
Length = 512
Score = 31.1 bits (67), Expect = 0.41
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 224 PSPPSRVKADTLRAHKTGRWLNRLQAAMRTGXXXXXXXXXXXXTWRGCA-GARERGGTPC 400
P + + T TG + ++ R +W+ CA G RER G+PC
Sbjct: 152 PQKLAEITGSTAYERFTGNQIAKIYQTKRESYNECERISLARASWQACAPGLRERLGSPC 211
Query: 401 P 403
P
Sbjct: 212 P 212
>SB_20763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = -3
Query: 309 RIAACSRFNHLPVLCALKVSAFTLEGGDGIVVVFLRHNDGDDAPALVDDGRAGDVPVRRL 130
R+A CS N C K S F + + + +GD + G GD RRL
Sbjct: 36 RLAMCSGSNRRMAACLPKRSVFPIREDENLADNLAIDGEGDAIARALFSGEVGDSKKRRL 95
>SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -3
Query: 168 DDGRAGDVPVRRLEGRRAPPLRQVPV 91
D+G G+ P RRL R AP LR VPV
Sbjct: 65 DEGHKGE-PARRLVFRSAPCLRAVPV 89
>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
Length = 662
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 429 ARRRAPPQHGHGVPPRSRAPAQPRHVLAEGGAARESQLPV 310
ARR AP H GV P + + + + GG+ E L V
Sbjct: 619 ARRVAPEPHDQGVSPHESKAWEAKALDSSGGSMMEDDLDV 658
>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1814
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -1
Query: 155 PAMYRFADSKVGAHRHCARCPSLDTISMRLAL 60
P++YR + +V ++R C CPS+ +S+R+++
Sbjct: 479 PSVYRLS-IRVSSNRPCIVCPSVYRLSVRVSV 509
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 179 PRWSTMGVPAMYRFADSKVGAHRHCARCPSLDTISMRLALFMKTLENKSENQQAATTSR 3
PR+ TMG + + R+ R SLDT+S+R ++ L K++ + T +
Sbjct: 718 PRYKTMGRSSSLSSLRGEAETERY-ERRGSLDTVSIRQTVYDNWLSRKNQTIKKELTKK 775
>SB_26370| Best HMM Match : Drf_FH1 (HMM E-Value=5.2)
Length = 190
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -2
Query: 322 STPRTHSRLQPVQPPSSFVCSQSIR-LHPXXXXRHSGC 212
STP T+ L PV +F C+Q + LHP S C
Sbjct: 52 STPNTYISLYPVPQVPTFHCTQYPQYLHPIVPSTPSTC 89
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 331 SGKSTPRTHSRLQPVQPPSSFVCSQSIRLHP 239
SG+S+PR S Q V+ P F ++S HP
Sbjct: 403 SGQSSPRQASPPQSVKSPIHFQANKSPPFHP 433
>SB_38385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +1
Query: 88 SDGHLAQWRCAPTFESANRYIAGTPIVDQRGGVISVVVAKKN 213
SDGH R T ESA RY GT RGG+ V K N
Sbjct: 26 SDGH-GSARPGTT-ESAGRYDRGTHPAPDRGGINITPVYKDN 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,222,112
Number of Sequences: 59808
Number of extensions: 261826
Number of successful extensions: 801
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -