Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0874
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   3.1  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   5.4  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   5.4  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   5.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   7.1  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    25   9.4  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   9.4  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.4  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 515 FFQGVDRGSHVSVVVRQEVANGIIVFGN 432
           FFQG+  G+H++   R  V   + VFG+
Sbjct: 349 FFQGLWFGNHLATTKRVNVGQVVTVFGS 376


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 450 SISNFLTHYDAYMASPIDTLKEFY 521
           SISN +  +D YMA  +    EF+
Sbjct: 428 SISNIIRMWDTYMAEGVQGFSEFH 451


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 396 VAKAEV-LLSRLVVSENYDSISNFLTHY 476
           V K E+  L++ +V +    ISNFLTHY
Sbjct: 41  VPKIEMNFLNKPIVPDTTKVISNFLTHY 68


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -1

Query: 446 IVFGNHETTQQYLGFGDQLLVLTESEVQSRTGCPPARRRQGVVGRPATGIILVPG 282
           ++ G ++  +       + L+ +++E+Q       A R +  + RPA+  IL PG
Sbjct: 209 LLIGENQDAENTADTSKRGLLTSQTEIQFFKAAHSALRLKASMTRPASNAILQPG 263


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 464 PDALRRLHGFPYRHPERILPEI 529
           P+ +R ++GF +  PE+I+ E+
Sbjct: 419 PEIIREMNGFDFGPPEKIVREL 440


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 96  TYPLFGWKPSEEDALFRSSLFVYF*PRAEF 7
           ++P+F     EED  F  +   Y  PR+EF
Sbjct: 213 SFPIFKKPDDEEDYQFSDNFDAYGAPRSEF 242


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/67 (20%), Positives = 30/67 (44%)
 Frame = -1

Query: 527 FLVKFFQGVDRGSHVSVVVRQEVANGIIVFGNHETTQQYLGFGDQLLVLTESEVQSRTGC 348
           ++ + F G  +  H  +++ +++    ++  NH   +    FG   ++  ES      G 
Sbjct: 146 YMKQLFAGT-KYLHDQLILHRDLKAANLLIDNHGILK-IADFGLARVITEESYANKNPGL 203

Query: 347 PPARRRQ 327
           PP  RR+
Sbjct: 204 PPPNRRE 210


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 109 GFIFNISIVWLEAERRR 59
           GF+  IS +W+ A RR+
Sbjct: 795 GFVLGISRIWVSASRRK 811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,894
Number of Sequences: 5004
Number of extensions: 28247
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)