Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0874
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)                   29   3.2  
SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              28   5.5  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                27   9.6  

>SB_38709| Best HMM Match : Ank (HMM E-Value=3.6e-10)
          Length = 218

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 268 NHSAPQRPTMRRMARASPDVDTVGAVGS 185
           +HS P +P +RRM+  + D D++ A  S
Sbjct: 84  SHSVPLKPAIRRMSSLNSDSDSLSACSS 111


>SB_57739| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 497 RGSHVSVVVRQEVANGII-VFGNHE 426
           R SHV+V  RQ V NG++    NHE
Sbjct: 305 RASHVTVFTRQRVGNGLLQAVYNHE 329


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 15  HEARSKQTTNSEKGHLLRSASSQTMDMLNIKPLSEDI 125
           H  R   T N+ + H L S+ S  M    I+P  +DI
Sbjct: 594 HSRRVVDTNNANRLHFLTSSGSSRMSEFCIQPFLDDI 630


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 85  VWLEAERRRCPFSEFVVCL 29
           +W ++E R C  SEF VCL
Sbjct: 129 LWRKSENRNCTGSEFKVCL 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,083
Number of Sequences: 59808
Number of extensions: 232559
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)