Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0874
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical p...    28   3.7  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical p...    27   8.5  

>Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.4 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 135 ETTLCPHLTVLYLTYPLFGWKPSEEDALFRSSLFV 31
           ET + P   VLYLT+P+FG K  +      SS+FV
Sbjct: 296 ETVMMPW--VLYLTHPMFGPKKQQLKPSGASSVFV 328


>U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.1 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 35  NNELRKRASSSLGFQPNNGYVKYKTV 112
           N  +RK+ SS    +PN GY+ YK V
Sbjct: 56  NAAIRKKGSSDKSVKPNVGYMYYKLV 81


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 416 QYLGFGDQLLVLTESEVQSRTGCPPARRRQGVVGRPATGIILVPGAESA 270
           Q+LGFG  +  +T S +QS  G  P  R      +P    I    AE A
Sbjct: 192 QFLGFGADVSNITTSAIQSVIGIAPKNRNMITWEKPLLKKIEETAAEHA 240


>Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical
           protein T09A5.12 protein.
          Length = 708

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 461 VANGIIVFGNHETTQQYLGFGDQLLVLTES 372
           V  G+ V GN ET + YLG   +  ++TE+
Sbjct: 472 VNEGVDVLGNVETIRSYLGSSGRFRLVTEN 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,004,817
Number of Sequences: 27780
Number of extensions: 165608
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)