Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0874
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.85 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.5  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.9  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 313 RPTTPCRRRAGGHPVRLCTSLSVNTRSWSPKPRYC*VVSWF 435
           R  T  R   G   V   +++S+++R+  PK RY   + WF
Sbjct: 270 REATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWF 310


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 39  TNSEKGHLLRSASSQTMDMLNI-KPLS 116
           TN++  HL R+ASS   D+ ++ +PL+
Sbjct: 266 TNTDARHLFRTASSTPEDLQDLEEPLT 292


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 524 LVKFFQGVDRGSHVSVVVRQEVA 456
           L+K F G D G + + VV +E+A
Sbjct: 66  LIKKFNGYDDGGNFNEVVIREIA 88


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -2

Query: 316 AGQ-LPALSWCLEPSQLNHSAPQR 248
           AG+ LP + W      LNH  P +
Sbjct: 426 AGEPLPRVQWLKNDEALNHDQPDK 449


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 213 SGEARAIRRIVGRW 254
           SG  RAIR I G W
Sbjct: 145 SGLKRAIRSIFGAW 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,055
Number of Sequences: 438
Number of extensions: 1939
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)