Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0874
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    29   1.9  
At1g11310.1 68414.m01299 seven transmembrane MLO family protein ...    28   4.5  
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    27   7.9  

>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 467 QEVANGIIVFGNHETTQQYLGFGDQLLVL 381
           +EVA+G++V GNH+TT         L+ L
Sbjct: 198 EEVASGVVVPGNHDTTNNTANANMDLMAL 226


>At1g11310.1 68414.m01299 seven transmembrane MLO family protein /
           MLO-like protein 2 (MLO2) idenctical to membrane protein
           Mlo2 [Arabidopsis thaliana] gi|14091574|gb|AAK53795;
           similar to Mlo [Hordeum vulgare subsp. vulgare]
           gi|1877221|emb|CAB06083 SWISS-PROT:P93766
          Length = 573

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 301 PVAGRPTTPCRRRAGGHPVRLCTSLSVNTRSWSPKPRY 414
           P + RPTTP    +  H +    + SV     SP PRY
Sbjct: 478 PFSSRPTTPTHGSSPIHLLHNFNNRSVENYPSSPSPRY 515


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1092

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 100 FNISIVWLEAERRRCPFSEFVVCLLLASCRI 8
           F+ S V+ +    R PF EFVV + + +C +
Sbjct: 118 FSFSPVYADNAPSRLPFQEFVVGIAMKACHV 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,776
Number of Sequences: 28952
Number of extensions: 157201
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)