Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0872
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44012| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.32 
SB_56967| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)                      28   7.0  
SB_24972| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_59238| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_2671| Best HMM Match : Amidohydro_2 (HMM E-Value=5.6)               27   9.2  

>SB_44012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 12/24 (50%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = -3

Query: 67  CSNIFMICRINPRA--EFLQPGGS 2
           CS+++ +C + P++  EFLQPGGS
Sbjct: 38  CSDLYFVCLMTPKSTIEFLQPGGS 61


>SB_56967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 36 ILVPNSCSPGDP 1
          ILV NSCSPGDP
Sbjct: 8  ILVSNSCSPGDP 19


>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
          Length = 414

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 336 GGRSQNLILFIRGNAISGAPSI 271
           GG S+NLI F  G  I G PS+
Sbjct: 99  GGESKNLINFALGQDIGGVPSV 120


>SB_24972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 64  SNIFMICRINPRAEFLQPGGS 2
           +NI  I  + P  EFLQPGGS
Sbjct: 45  ANISRIDALRPNIEFLQPGGS 65


>SB_59238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 78 IKYNVPISL*FVE*ILVPNSCSPGDP 1
          I  N+P+        LV NSCSPGDP
Sbjct: 9  ISANIPLRNPNTRAHLVSNSCSPGDP 34


>SB_24159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -1

Query: 36 ILVPNSCSPGDP 1
          +LV NSCSPGDP
Sbjct: 16 LLVSNSCSPGDP 27


>SB_2671| Best HMM Match : Amidohydro_2 (HMM E-Value=5.6)
          Length = 270

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 165 SPINDPGFPNSARIKSLKDVPIIPDQIPKIKYNVPISL*FVE*ILVPNSCSPGDP 1
           +P   P F  S   K    VP   D   ++ + +  +L F   ++  NSCSPGDP
Sbjct: 102 APELQPIFAVSVTYKQQPCVPFY-DMEAQVCFILHCNLLFSINLITSNSCSPGDP 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,542,068
Number of Sequences: 59808
Number of extensions: 229699
Number of successful extensions: 2193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2123
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)