Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0871
         (594 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.64 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   3.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.5  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 269 GPHIRVPRSINLLNPQAELQACEEQNIPLIRYRKRIYIRATCDITSVS 412
           G H     ++  L PQ    + + Q+ PL+  R +I  +  C+ +SVS
Sbjct: 449 GFHNVTNTTLQNLTPQLNYISMKLQSFPLLSQRHQIDAKMFCNESSVS 496


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 312 RKLSFKRAKNKTF 350
           RK  FKRA+N TF
Sbjct: 370 RKFYFKRARNGTF 382


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 297 IERGTRMCGPEARLHSNYIYIYFV 226
           I +G + CG  + L SN+  + F+
Sbjct: 32  ISQGCKACGYHSPLESNHKLVTFI 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,505
Number of Sequences: 336
Number of extensions: 2863
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)