Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0871
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)               28   4.9  
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   4.9  
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)
          Length = 847

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 448 LDPRAVPPWYHCTNTSNVTRSAYINAFTISYQR 350
           ++ ++VPPW+H  N + V   + + + T +Y R
Sbjct: 342 VESKSVPPWFHPPNKTIVGSGSIVTSVTGTYVR 374


>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 448 LDPRAVPPWYHCTNTSNVTRSAYINAFTISYQR 350
           ++ ++VPPW+H  N + V   + + + T +Y R
Sbjct: 504 VESKSVPPWFHPPNKTIVGSGSIVTSVTGTYVR 536


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 157 HGHQQISGAQLSCCPLHLP*LKKNEIYIYVIAM*TCLRTTHPSST 291
           +GH  +       CP+HL  +  N +    I M TC RT    ST
Sbjct: 101 YGHAYLQSRDT--CPVHLVLISVNLLLCITILMVTCARTRQAGST 143


>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 439 RAVPPWYHCTNTSNVTRSAYINAFTISYQRNVL 341
           ++VPPW+H  N + V   + + + T ++ R ++
Sbjct: 416 KSVPPWFHLPNKTIVGNGSIVTSVTGTFARRLV 448


>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 416 MVPGWDCSRIEPVDQRYL 469
           M PGW C++ EP++ R L
Sbjct: 797 MCPGWGCTQTEPINNRSL 814


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,163
Number of Sequences: 59808
Number of extensions: 371328
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)