Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0871
         (594 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    34   0.066
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical p...    29   3.3  
U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic...    28   5.8  
U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 34.3 bits (75), Expect = 0.066
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = +3

Query: 243 CNCYVNVPPDHTSEFHAQLTY*TRKLSFKRAKNKTFR*YDIVNAFIYALRVTLLVLVQWY 422
           C+C+VN PP  T E H      ++ L  K  + + F    I+         T+L+++++ 
Sbjct: 24  CDCHVNDPPPWTGEVHGL----SQALMSKTLRMRIFWWIVIIICISLGAFTTVLIIIEYI 79

Query: 423 QGGTALGSS 449
           QG TA  ++
Sbjct: 80  QGPTATSTT 88


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 442 PRAVPPWYHCTNTSNVTRSA 383
           P+ V  WYHC +TS  T +A
Sbjct: 96  PKIVNNWYHCASTSQTTPTA 115


>Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical
           protein F44D12.4 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 499 KEYLFANRIKNS*RSQQCIVKVALPRSNDP 588
           + Y  A  +K+  R ++CI+++  P+S DP
Sbjct: 196 RHYQVARMLKSIRRGEECIIRLIAPKSADP 225


>U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical
           protein C35D10.2 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 499 KEYLFANRIKNS*RSQQCIVKVALPRSNDP 588
           + Y  A  +KN  R ++C+V++  P++ DP
Sbjct: 196 RHYQVARILKNVRRGEECVVRLIAPKTADP 225


>U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic
           protein protein 1 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 424 WYHCTNTSNVTRSAYI--NAFTISYQ 353
           WY   NTS+++R+ YI  N FT+  Q
Sbjct: 156 WYFAWNTSDISRNNYIRTNGFTVHRQ 181


>U40160-2|AAA81156.1|  547|Caenorhabditis elegans Hypothetical
           protein C56E10.1 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 111 ADKHRTQLIVSIYCRPWTSANFRGTAELLPTASTMT*KKRNIYICN 248
           A+ H + L++SI CR   +  F   AE  P   TM  +   +  CN
Sbjct: 12  ANAHSSLLLLSIICRAMFALRFALFAETEPLDITMRYRPTTVPSCN 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,383
Number of Sequences: 27780
Number of extensions: 278195
Number of successful extensions: 384
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)