Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0871
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27390.1 68416.m03424 expressed protein                             29   1.8  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    28   5.4  
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    27   9.4  

>At3g27390.1 68416.m03424 expressed protein 
          Length = 588

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 588 GVIAPGESHLHYTL---LASLTIFDSISK*IFLINLGKGYPAPKY 463
           GV++  ES  +Y L   +AS++I+D  S  I  +  G  +P PKY
Sbjct: 268 GVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKY 312


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
 Frame = -2

Query: 209 RCSGQQLSC---APEIC*CPWAT 150
           RCS ++ SC     E+C CPW T
Sbjct: 606 RCSPEKYSCLTHVKELCSCPWVT 628


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/72 (20%), Positives = 29/72 (40%)
 Frame = -2

Query: 386 RVYKCVYDIVSTECFVLRTLEAQLAGSIS*LSVELGCVVRRHVYIAITYIYISFFLSHGR 207
           RV K +    +T   +     +  + + S LS    CV  +H+ + +T   +   +    
Sbjct: 138 RVKKVISATTTTHSAIEECTSSLSSSAASTLSSSCSCVGDKHITVVVTPCLVGVEIIISC 197

Query: 206 CSGQQLSCAPEI 171
           C G+  SC   +
Sbjct: 198 CLGRNKSCLSSV 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,180
Number of Sequences: 28952
Number of extensions: 251694
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)