Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0870
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...   225   2e-60
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...   204   7e-54
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    28   0.77 
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    27   1.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.1  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    26   4.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.2  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    25   9.5  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.5  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =  225 bits (551), Expect = 2e-60
 Identities = 110/176 (62%), Positives = 134/176 (76%), Gaps = 1/176 (0%)
 Frame = +3

Query: 12  MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 191
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD  K+++ GK
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60

Query: 192 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 371
           GVL A+ N+N +IAP + KANL+VT Q+  DE +LKLDGTENKSKLGANAILGVS+    
Sbjct: 61  GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120

Query: 372 XXXXXXNVPLYKHLADLAG-NNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 536
                  +PL+K++A+  G     VLPVP+FNV+NGGSHAG  LA QEFMI PTGA
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGA 176


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score =  204 bits (498), Expect = 7e-54
 Identities = 98/174 (56%), Positives = 127/174 (72%), Gaps = 1/174 (0%)
 Frame = +3

Query: 18  IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 197
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA ELRDN K+++ GKGV
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63

Query: 198 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 377
             A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+GVS+      
Sbjct: 64  TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123

Query: 378 XXXXNVPLYKHLADLAGNNDI-VLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 536
                +PLY+++  LAG+     +PVP+FNV+NGG HAG  LA QEFMI P  A
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKA 177


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = +3

Query: 48  DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 227
           D +G    +VD       ++A     +ST     LE R N + E     V TAI  + E 
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198

Query: 228 IAPELTKANLEV 263
              ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 356 PSCC*GWCCQEE 391
           PSCC G CC+EE
Sbjct: 490 PSCCGGHCCKEE 501


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/77 (23%), Positives = 34/77 (44%)
 Frame = +3

Query: 57   GNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAP 236
            G P +   ++  LG F +   S  S  +    ++ + + +E H    +   K +NE +A 
Sbjct: 1109 GEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLATEIHYAASVGQNKYLNEYVA- 1167

Query: 237  ELTKANLEVTQQREIDE 287
             L + N E T   E+ +
Sbjct: 1168 SLIRTN-EKTHSTELSQ 1183


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 162 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 326
           D++K E    KG +T +KN  + +  E T    EVT  ++ I +L  K+D  + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -2

Query: 248 FCKFRSNEFIDIFDCGQNSLAMIFTLDV-IS*FKSFMNTSGCTRGYSCPEQAKL 90
           F +   +EF +IF+C  ++LA++      +S   + +N +G    + C   AK+
Sbjct: 657 FVEILESEFPNIFECLVDNLALLHIFQFWMSNEVTSVNCTGIVLSFCCDNLAKI 710


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 117 PSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL--IAPELTKANLEVTQQREIDEL 290
           P  A+  +H+  E  +N+KSE+  KG + A K  +E   +   + KA  E    + I ++
Sbjct: 429 PILANIYLHQLDEFIENLKSEFDYKGPI-ARKRTSESRHLHYLMAKAKRENADSKTIRKI 487

Query: 291 MLKLDGTENK 320
            +++    NK
Sbjct: 488 AIEMRNVPNK 497


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 529 VGKIMNSCMASLFPACDPPLITLNAGTGRTMSL 431
           +G+ +N  +  LFP+CD  LI      G T+ L
Sbjct: 204 LGEFLNKRLPDLFPSCDKFLIVKPVIHGITIFL 236


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 45  FDSRGNPTVEVDLVTELGLFRAAVPSGASTG 137
           F     PTV VDL     L RA  P   STG
Sbjct: 528 FSRYNQPTVSVDLRNSSILRRAQEPVNGSTG 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,507
Number of Sequences: 5004
Number of extensions: 39135
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)