Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0870
         (537 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)              100   7e-22
SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   93   1e-19
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             36   0.016
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   3.2  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   4.2  
SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)                  28   4.2  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   5.6  
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         27   7.3  
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)                   27   9.7  

>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score =  100 bits (240), Expect = 7e-22
 Identities = 46/75 (61%), Positives = 58/75 (77%)
 Frame = +3

Query: 96  GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 275
           G FRAAVPSGASTG++EALELRD   S++ GKGV  A+ N+N +I P L   N++VT Q 
Sbjct: 40  GTFRAAVPSGASTGIYEALELRDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQE 99

Query: 276 EIDELMLKLDGTENK 320
           +ID +ML+LDGTENK
Sbjct: 100 DIDNMMLQLDGTENK 114


>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 40/48 (83%), Positives = 45/48 (93%)
 Frame = +3

Query: 393 VPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 536
           VPLYK++A LAGNN ++LPVPAFNVINGGSHAGNKLAMQEFM+ PTGA
Sbjct: 26  VPLYKYIAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFMLLPTGA 73


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +3

Query: 462 NVINGGSHAGNKLAMQEFMIFPTGA 536
           N++NGG+HA + + +QEFMI P GA
Sbjct: 2   NILNGGAHADSDVDIQEFMIAPIGA 26


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 201 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 323
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 165 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 278
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_9773| Best HMM Match : TPR_2 (HMM E-Value=3.2e-06)
          Length = 553

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 402 YKHLADLAGNNDIVLPVPAFNVING-GSHAGNKLAMQE 512
           Y HL+ +   +D+ LPV  +N+ +G G   G+ +A+ E
Sbjct: 268 YLHLSRVKDKSDLCLPVTVYNMASGAGFVVGDAIAIPE 305


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 201 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 347
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 141 HEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQ 269
           H+A ++RD      +G+     +  IN L+AP +   +  +T+
Sbjct: 330 HQAQDVRDATSKALYGRLFSWIVNKINHLLAPSIESRDQHLTE 372


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 344 DSISTQFGFVLSAIQLKHEFINLSLLGYFEVGFCKFRSNEFID 216
           + + T F      ++ +H F    + GY + GF KFRS + +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELD 675


>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
          Length = 412

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +3

Query: 201 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSK 326
           T + +I E +A E+T+    V  +   D+L+ +++G EN+S+
Sbjct: 104 TGVGSIEEDVA-EITERLETVATRETTDQLLTRVEGLENRSR 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,121
Number of Sequences: 59808
Number of extensions: 307527
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)