Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0870
         (537 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74030.1 68414.m08573 enolase, putative similar to Swiss-Prot...   235   1e-62
At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696 ...   204   2e-53
At2g29560.1 68415.m03590 enolase, putative similar to enolase [S...   184   3e-47
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa...    29   1.5  
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    29   2.0  
At1g64050.1 68414.m07255 expressed protein                             28   4.5  
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    27   6.0  
At3g45940.1 68416.m04971 alpha-xylosidase, putative strong simil...    27   6.0  
At1g76520.2 68414.m08905 auxin efflux carrier family protein con...    27   6.0  
At1g76520.1 68414.m08904 auxin efflux carrier family protein con...    27   6.0  

>At1g74030.1 68414.m08573 enolase, putative similar to
           Swiss-Prot:P15007 enolase (EC 4.2.1.11)
           (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate
           hydro-lyase) [Drosophila melanogaster]
          Length = 477

 Score =  235 bits (576), Expect = 1e-62
 Identities = 116/173 (67%), Positives = 137/173 (79%)
 Frame = +3

Query: 18  IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 197
           +K +KARQI DSRGNPTVEVDL+T+  L+R+AVPSGASTG++EALELRD  KS Y GKGV
Sbjct: 51  VKGVKARQIIDSRGNPTVEVDLITD-DLYRSAVPSGASTGIYEALELRDGDKSVYGGKGV 109

Query: 198 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 377
           L AIKNINEL+AP+L    ++V  Q ++D LML+LDGT NKSKLGANAILGVSL      
Sbjct: 110 LQAIKNINELVAPKLI--GVDVRNQADVDALMLELDGTPNKSKLGANAILGVSLSVCRAG 167

Query: 378 XXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 536
                VPLYKH+ + +G  ++V+PVPAFNVINGGSHAGN LAMQEFMI P GA
Sbjct: 168 AGAKGVPLYKHIQETSGTKELVMPVPAFNVINGGSHAGNSLAMQEFMILPVGA 220


>At2g36530.1 68415.m04481 enolase identical to SWISS-PROT:P25696
           enolase (EC 4.2.1.11) (2-phosphoglycerate
           dehydratase)(2-phospho-D- glycerate hydro-lyase)
           [Arabidopsis thaliana]
          Length = 444

 Score =  204 bits (499), Expect = 2e-53
 Identities = 113/180 (62%), Positives = 129/180 (71%), Gaps = 7/180 (3%)
 Frame = +3

Query: 18  IKSIKARQIFDSRGNPTVEVDLVTELGL-FRAAVPSGASTGVHEALELRDNIKSEYHGKG 194
           I  +KARQIFDSRGNPTVEVD+ T  G+   AAVPSGASTG++EALELRD   S+Y GKG
Sbjct: 4   ITVVKARQIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDG-GSDYLGKG 62

Query: 195 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 356
           V  A+ N+N +I P L     + TQQ  ID  M+ +LDGT+N     K KLGANAIL VS
Sbjct: 63  VSKAVGNVNNIIGPALI--GKDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVS 120

Query: 357 LXXXXXXXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 536
           L           +PLYKH+A+LAGN  IVLPVPAFNVINGGSHAGNKLAMQEFMI P GA
Sbjct: 121 LAVCKAGAVVSGIPLYKHIANLAGNPKIVLPVPAFNVINGGSHAGNKLAMQEFMILPVGA 180


>At2g29560.1 68415.m03590 enolase, putative similar to enolase
           [Spinacia oleracea] gi|8919731|emb|CAB96173
          Length = 475

 Score =  184 bits (449), Expect = 3e-47
 Identities = 96/174 (55%), Positives = 118/174 (67%)
 Frame = +3

Query: 15  VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKG 194
           VI  +KARQI DSRG PTVEVDL T  G+FRA+VPSG S+G +EA+ELRD  K  Y G  
Sbjct: 46  VITKVKARQILDSRGIPTVEVDLHTNKGVFRASVPSGDSSGTYEAIELRDGDKGMYLGNS 105

Query: 195 VLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXX 374
           V  A+KNINE I+  L    ++   Q +ID+ M+ LD TE KS+LGANAIL VS+     
Sbjct: 106 VAKAVKNINEKISEALI--GMDPKLQGQIDQAMIDLDKTEKKSELGANAILAVSIAACKA 163

Query: 375 XXXXXNVPLYKHLADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 536
                 VPL KHL+DL+G  ++VLPVPAF V++GG HA N  A+QE MI P GA
Sbjct: 164 GAAEKEVPLCKHLSDLSGRANMVLPVPAFTVLSGGKHASNTFAIQEIMILPIGA 217


>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
           family protein contains a Zinc finger, C3HC4 type (RING
           finger) signature, PROSITE:PS00518
          Length = 688

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
 Frame = +3

Query: 144 EALELRDNIKSEYHGKG--VLTAIKNINELIA-PELTKANLEVTQQREIDELM 293
           E+ E+ D +  EY  K   +LT +K++   ++ PELT+  L++  Q + DEL+
Sbjct: 143 ESEEIADGV-DEYETKEDIMLTILKDLRSSVSEPELTEEQLKMNDQLQEDELL 194


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = +3

Query: 6   GKMVIKS--IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSE 179
           GK V     +     F S G P  E + +TE  L       G+S G  + +E  +  +  
Sbjct: 293 GKSVFNGSPVSLPSFFSSFGRPIPEKENITEFALDVIRELEGSSEGTRDLVEFNEKWQQN 352

Query: 180 YHGKGVLTAIKNINELIAPELTKANL 257
              +    +  ++ E IA  +++  L
Sbjct: 353 QTARATTQSRVSLKEAIAASVSRGKL 378


>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 139 TPVDAPEGTAARNKPSSVTRSTSTVGLPRESKI 41
           +P+ +PE   +  K   ++RS+S  G PR +K+
Sbjct: 107 SPIASPESAESPRKRGKLSRSSSGNGTPRRTKL 139


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/89 (22%), Positives = 42/89 (47%)
 Frame = +3

Query: 12  MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 191
           +V +SI   ++ +   + + +VD V E    + ++PS  S  +HE    R N+   +HG 
Sbjct: 377 LVQESIDGAKVGERAVSSSSDVDTV-ECRNCKHSIPS-RSIALHEVYCSRHNVVCNHHGC 434

Query: 192 GVLTAIKNINELIAPELTKANLEVTQQRE 278
           G++  ++     +  E     L+ T+  +
Sbjct: 435 GIVLRVEEAKNHLHCEKCGKALQPTEMEK 463


>At3g45940.1 68416.m04971 alpha-xylosidase, putative strong
           similarity to alpha-xylosidase precursor GI:4163997 from
           [Arabidopsis thaliana]
          Length = 868

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 444 LPVPAFNVINGGSHAGNKLAMQEFMIFPTGA 536
           LP P FNV+N   +    L MQ+ + FP GA
Sbjct: 690 LPAP-FNVVNVHLYQNAILPMQQVVAFPAGA 719


>At1g76520.2 68414.m08905 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 27  IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNI 170
           +K  ++F +   P VE+ L+T +G + A    G +   H+A +  +NI
Sbjct: 2   VKLLELFITSSKPVVEILLITSVGFYMAL--DGVNLLGHDARKYLNNI 47


>At1g76520.1 68414.m08904 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 390

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 27  IKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNI 170
           +K  ++F +   P VE+ L+T +G + A    G +   H+A +  +NI
Sbjct: 2   VKLLELFITSSKPVVEILLITSVGFYMAL--DGVNLLGHDARKYLNNI 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,357,364
Number of Sequences: 28952
Number of extensions: 212069
Number of successful extensions: 529
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)