Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0868
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    29   0.37 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    29   0.49 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   1.5  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    27   1.5  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   2.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   3.5  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    25   4.6  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   8.0  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 271 NLYDYNHHY-SEDTVPEFVKMRNKVKIWIMM 360
           NLY+ NHH+ +++   E ++  +K  IWI++
Sbjct: 112 NLYELNHHFGTKEEFMELIQELHKRDIWILL 142


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 224  PKKKLFIFWVFKFQYPLQLNIFVDCSVTYLLQFRCF-SHLFLNI 96
            P  K+F  ++  F Y +  N+F+ C  T   Q   F    FLN+
Sbjct: 884  PNTKVFCLYLVSFSYSIISNLFLGCETTERAQLASFLLKEFLNL 927


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 205 FFGFSSFNIHCNLIYL*IVQ*HTYYNLDVSLICF*IFFNVFS 80
           FF F  F  HC   ++ I   H Y +  V   CF  +F++FS
Sbjct: 78  FFFFFFFFSHCRRFHIAIFI-HPYDSNVVPFFCFFFYFSLFS 118


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -1

Query: 209 FIFWVFKFQYPLQLNIFVDCSVTYLLQFRCFSHLFLNIFQRLFHS*TALALIKCIVF*NA 30
           F FWV    + L LN F+   V + L  + +S+    IF  LF +   L L   I F +A
Sbjct: 86  FSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSA 145


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 72  NCFSSY*VHSILKCIRTCSPG 10
           N  S Y  H+I+ C RTC  G
Sbjct: 215 NSMSVYRCHTIMNCARTCPKG 235


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 209 FIFWVFKFQYPLQLNIFVDCSV-TY 138
           F FW    +YP+Q+  FVD ++ TY
Sbjct: 270 FAFWDVDQEYPVQVRNFVDSNIHTY 294


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 251 VSSIRNCI*PKKKLFIFWVFKFQYPLQLNIFVDCSVTYLLQFR 123
           + ++  C  P  +    W F F Y + LNI   C +  +  FR
Sbjct: 199 ILTLSACTAPLSEALTIWDFLFAYGIHLNIL--CVIAQMFIFR 239


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 165 YICRLFSNIPITI*MFLSSVFKYFSTSFPLLN 70
           Y+ RLF  +  +   F +S+F YF     ++N
Sbjct: 219 YVFRLFDRVSSSTFYFFNSLFAYFIILLRIIN 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,049
Number of Sequences: 5004
Number of extensions: 33778
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)