Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0868
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56829| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_29708| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         27   6.2  
SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)                    27   8.2  
SB_42003| Best HMM Match : IQ (HMM E-Value=0.15)                       27   8.2  
SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)               27   8.2  

>SB_56829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 274 LYDYNHHYSEDTVPEFVK 327
           +Y+ NHH SED +PEF K
Sbjct: 141 VYNVNHHQSEDKMPEFRK 158


>SB_29708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 384 NLFSHFPMHHNPYLHFISHFNK 319
           N F+ + +HH+P  H  +HF K
Sbjct: 28  NAFNDYRLHHHPPAHKYAHFQK 49


>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
 Frame = +1

Query: 262  LKLNLYDYN-----HHYSEDTVPEFVKMRNKV--KIWIMMHRKVTK 378
            +KLNL ++N     HH+  DT+   +KM  K+  KI+   H + +K
Sbjct: 1242 MKLNLKEFNKFLTYHHFKMDTLETAIKMMKKLNTKIFTEDHTRQSK 1287


>SB_51978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 390 HFNLFSHFPMHHNPYLHFISHFNKFWH 310
           H    SH   HHNPY H++ H     H
Sbjct: 102 HHQKQSHHHFHHNPY-HYLRHSQLHHH 127


>SB_42254| Best HMM Match : PH (HMM E-Value=5.5e-19)
          Length = 996

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 389 CCRTKPKQTFIRLKKYLILLESMNRKL 469
           CC  KP   F   KKY I +  +N KL
Sbjct: 172 CCARKPNHLFSLSKKYTIPVIKINAKL 198


>SB_42003| Best HMM Match : IQ (HMM E-Value=0.15)
          Length = 306

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 389 CCRTKPKQTFIRLKKYLILLESMNRKL 469
           CC  KP   F   KKY I +  +N KL
Sbjct: 211 CCARKPNHLFSLSKKYTIPVIKINAKL 237


>SB_41920| Best HMM Match : Filamin (HMM E-Value=0.00015)
          Length = 600

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 405 GLVRQHFNLFSHFPMHHNPYLH 340
           GL+R+ FN+FS  P + NP  H
Sbjct: 41  GLIRRQFNVFSGNPGNVNPGFH 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,573,972
Number of Sequences: 59808
Number of extensions: 214139
Number of successful extensions: 1378
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)